Homologs in group_249

Help

7 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_03225 FBDBKF_03225 82.3 Morganella morganii S1 kdsD arabinose-5-phosphate isomerase KdsD
EHELCC_07310 EHELCC_07310 82.3 Morganella morganii S2 kdsD arabinose-5-phosphate isomerase KdsD
NLDBIP_07635 NLDBIP_07635 82.3 Morganella morganii S4 kdsD arabinose-5-phosphate isomerase KdsD
LHKJJB_07170 LHKJJB_07170 82.3 Morganella morganii S3 kdsD arabinose-5-phosphate isomerase KdsD
HKOGLL_03760 HKOGLL_03760 82.3 Morganella morganii S5 kdsD arabinose-5-phosphate isomerase KdsD
F4V73_RS11695 F4V73_RS11695 83.2 Morganella psychrotolerans kdsD arabinose-5-phosphate isomerase KdsD
F4V73_RS12535 F4V73_RS12535 28.4 Morganella psychrotolerans - CBS domain-containing protein

Distribution of the homologs in the orthogroup group_249

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_249

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q8D1Q8 0.0 521 77 1 322 3 kdsD Arabinose 5-phosphate isomerase KdsD Yersinia pestis
Q8X9J0 0.0 508 74 1 327 3 kdsD Arabinose 5-phosphate isomerase KdsD Escherichia coli O157:H7
P45395 0.0 508 74 1 327 1 kdsD Arabinose 5-phosphate isomerase KdsD Escherichia coli (strain K12)
Q8FD73 0.0 507 74 1 327 3 kdsD Arabinose 5-phosphate isomerase KdsD Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
Q83JF4 0.0 505 74 1 327 3 kdsD Arabinose 5-phosphate isomerase KdsD Shigella flexneri
Q8ZLS1 1.76e-180 504 75 1 322 3 kdsD Arabinose 5-phosphate isomerase KdsD Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q8Z3G6 3.78e-180 503 75 1 322 3 kdsD Arabinose 5-phosphate isomerase KdsD Salmonella typhi
Q9HVW0 3.93e-120 351 55 1 321 1 kdsD Arabinose 5-phosphate isomerase KdsD Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q5NGP7 5.88e-106 315 50 3 312 1 kdsD Arabinose 5-phosphate isomerase KdsD Francisella tularensis subsp. tularensis (strain SCHU S4 / Schu 4)
Q8FEN7 3.82e-98 295 47 2 317 3 gutQ Arabinose 5-phosphate isomerase GutQ Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
Q8Z4C7 1.91e-97 293 47 2 317 3 gutQ Arabinose 5-phosphate isomerase GutQ Salmonella typhi
P17115 2.46e-96 291 47 2 317 1 gutQ Arabinose 5-phosphate isomerase GutQ Escherichia coli (strain K12)
Q8X4S5 2.46e-96 291 47 2 317 3 gutQ Arabinose 5-phosphate isomerase GutQ Escherichia coli O157:H7
Q83MK2 6.78e-96 290 46 2 315 3 gutQ Arabinose 5-phosphate isomerase GutQ Shigella flexneri
Q8ZMJ9 9.7e-96 289 47 2 317 3 gutQ Arabinose 5-phosphate isomerase GutQ Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
O67500 7.36e-94 284 44 2 321 3 aq_1546 Uncharacterized phosphosugar isomerase aq_1546 Aquifex aeolicus (strain VF5)
Q8FDQ2 1.25e-76 241 43 2 294 1 kpsF Arabinose 5-phosphate isomerase KpsF Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
Q47334 2.42e-76 240 43 2 294 3 kpsF Arabinose 5-phosphate isomerase KpsF Escherichia coli
P42502 5.36e-74 233 47 1 254 3 kpsF Arabinose 5-phosphate isomerase KpsF Escherichia coli
P45313 2.89e-71 227 41 3 306 3 HI_1678 Probable arabinose 5-phosphate isomerase Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q9ZD42 1.16e-69 223 40 3 295 3 RP505 Uncharacterized protein RP505 Rickettsia prowazekii (strain Madrid E)
Q9ZJI5 1.81e-61 202 37 4 325 3 jhp_1324 Uncharacterized protein jhp_1324 Helicobacter pylori (strain J99 / ATCC 700824)
O25971 4.4e-60 198 37 5 325 3 HP_1429 Uncharacterized protein HP_1429 Helicobacter pylori (strain ATCC 700392 / 26695)
Q9PJZ7 5.79e-52 177 36 3 291 3 TC_0679 Uncharacterized protein TC_0679 Chlamydia muridarum (strain MoPn / Nigg)
O84404 7.33e-51 174 35 3 291 3 CT_399 Uncharacterized protein CT_399 Chlamydia trachomatis serovar D (strain ATCC VR-885 / DSM 19411 / UW-3/Cx)
Q9M1T1 4.77e-47 165 32 3 283 2 SETH3 Probable arabinose 5-phosphate isomerase Arabidopsis thaliana
Q9Z826 3.57e-43 154 33 2 291 3 CPn_0526 Uncharacterized protein CPn_0526/CP_0226/CPj0526/CpB0547 Chlamydia pneumoniae
Q9YAK0 4.92e-06 50 30 3 115 3 APE_1940.1 Uncharacterized protein APE_1940.1 Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)
O28478 4.98e-05 47 22 4 186 1 AF_1796 Uncharacterized protein AF_1796 Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16)
Q9SJQ5 0.000514 45 30 1 92 2 CBSCBSPB2 CBS domain-containing protein CBSCBSPB2 Arabidopsis thaliana
Q81J01 0.001 44 26 5 157 3 glmS Glutamine--fructose-6-phosphate aminotransferase [isomerizing] Bacillus cereus (strain ATCC 14579 / DSM 31 / CCUG 7414 / JCM 2152 / NBRC 15305 / NCIMB 9373 / NCTC 2599 / NRRL B-3711)
Q6HPL2 0.001 44 26 5 157 3 glmS Glutamine--fructose-6-phosphate aminotransferase [isomerizing] Bacillus thuringiensis subsp. konkukian (strain 97-27)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS18175
Feature type CDS
Gene kdsD
Product arabinose-5-phosphate isomerase KdsD
Location 3989248 - 3990234 (strand: -1)
Length 987 (nucleotides) / 328 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_249
Orthogroup size 8
N. genomes 7

Actions

Genomic region

Domains

PF00571 CBS domain
PF01380 SIS domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0794 Carbohydrate transport and metabolism (G)
Cell wall/membrane/envelope biogenesis (M)		 GM D-arabinose 5-phosphate isomerase GutQ

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K06041 arabinose-5-phosphate isomerase [EC:5.3.1.13] Lipopolysaccharide biosynthesis
Metabolic pathways
Biosynthesis of nucleotide sugars		 CMP-KDO biosynthesis

Protein Sequence

MVQKMTGFDFQQAGKKVLQIEQEGLAELAQYINDDFSLACEKIFHCQGRVIVMGMGKSGHIGHKIAATFASTGTPSFFVHPGEASHGDLGMVTEKDIVLAISNSGEASEILALIPVLKRKQILLICMTRSPQSTMGKAADIHLCIKVPKEACPLGLAPTTSTTATLVMGDALAIALLRARGFTAEDFALSHPGGALGRKLLLHVSDLMNKEDDIPRVNKEATLREALVEITRKKLGMTVICDDNMLINGIFTDGDLRRIFDLGIDLNNAKISDVMTKGGIRISPDSLAVEALNLMQAKHITSLLVTEPDSDILLGVLHMHDLLQAGVV

Flanking regions ( +/- flanking 50bp)

GTTTATATTACGGTGTTGTGCGTTGCACATTCTCTCTTAACCTAAAATAAATGGTACAAAAAATGACCGGATTTGATTTTCAGCAAGCAGGTAAAAAGGTTCTTCAAATTGAACAAGAAGGATTAGCTGAGTTAGCACAATATATCAATGACGATTTTTCTCTTGCCTGTGAAAAAATCTTTCACTGTCAGGGAAGAGTGATTGTTATGGGCATGGGAAAATCAGGTCATATTGGGCATAAAATTGCCGCCACCTTTGCCAGTACCGGCACCCCCTCTTTTTTTGTTCACCCCGGTGAAGCCAGTCATGGCGATTTAGGTATGGTGACAGAAAAAGACATTGTGCTGGCAATTTCAAATTCAGGTGAAGCCAGTGAAATTCTCGCCCTTATCCCTGTCCTCAAGCGTAAACAGATCCTTTTAATTTGTATGACACGCTCACCTCAAAGTACAATGGGGAAAGCTGCTGATATTCATCTTTGTATAAAAGTCCCTAAAGAAGCTTGTCCGTTAGGCTTAGCCCCTACCACCAGCACAACGGCAACACTGGTGATGGGAGATGCCTTAGCTATCGCTTTATTGCGCGCTCGAGGTTTTACGGCGGAAGACTTTGCACTATCGCATCCCGGTGGTGCATTGGGGCGCAAATTATTGCTTCATGTCAGTGATTTAATGAATAAAGAGGATGATATTCCACGCGTTAACAAAGAAGCGACATTACGCGAAGCACTGGTAGAGATCACCCGTAAAAAATTAGGTATGACCGTTATCTGTGATGATAATATGTTGATTAACGGTATTTTTACTGATGGTGATTTGCGTCGTATCTTTGATTTAGGTATTGATCTTAATAATGCCAAAATATCAGATGTAATGACGAAAGGCGGAATTCGCATTTCCCCAGATAGCTTAGCGGTAGAAGCGCTTAATTTAATGCAAGCAAAACATATCACTTCACTGTTAGTCACTGAACCAGATAGTGATATTTTATTAGGTGTTTTACATATGCACGATTTATTGCAAGCTGGGGTTGTTTAAGCTTGTTATGCGTTCATAAGGATAAAGATGAATACAATGATAGAGACCTG