Homologs in group_733

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_03240 FBDBKF_03240 77.4 Morganella morganii S1 lptA lipopolysaccharide ABC transporter substrate-binding protein LptA
EHELCC_07295 EHELCC_07295 77.4 Morganella morganii S2 lptA lipopolysaccharide ABC transporter substrate-binding protein LptA
NLDBIP_07620 NLDBIP_07620 77.4 Morganella morganii S4 lptA lipopolysaccharide ABC transporter substrate-binding protein LptA
LHKJJB_07155 LHKJJB_07155 77.4 Morganella morganii S3 lptA lipopolysaccharide ABC transporter substrate-binding protein LptA
HKOGLL_03775 HKOGLL_03775 77.4 Morganella morganii S5 lptA lipopolysaccharide ABC transporter substrate-binding protein LptA
F4V73_RS11680 F4V73_RS11680 76.3 Morganella psychrotolerans lptA lipopolysaccharide ABC transporter substrate-binding protein LptA

Distribution of the homologs in the orthogroup group_733

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_733

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0ADV4 9.2e-68 207 56 1 176 3 lptA Lipopolysaccharide export system protein LptA Shigella flexneri
P0ADV1 9.2e-68 207 56 1 176 1 lptA Lipopolysaccharide export system protein LptA Escherichia coli (strain K12)
P0ADV2 9.2e-68 207 56 1 176 3 lptA Lipopolysaccharide export system protein LptA Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0ADV3 9.2e-68 207 56 1 176 3 lptA Lipopolysaccharide export system protein LptA Escherichia coli O157:H7
P45074 1.7e-49 160 53 3 161 1 lptA Lipopolysaccharide export system protein LptA Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q9HVV7 3.5e-05 45 27 3 140 1 lptH Lipopolysaccharide export system protein LptH Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS18160
Feature type CDS
Gene lptA
Product lipopolysaccharide ABC transporter substrate-binding protein LptA
Location 3987553 - 3988086 (strand: -1)
Length 534 (nucleotides) / 177 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_733
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF03968 LptA/(LptD N-terminal domain) LPS transport protein

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1934 Cell wall/membrane/envelope biogenesis (M) M Lipopolysaccharide export system protein LptA

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K09774 lipopolysaccharide export system protein LptA - -

Protein Sequence

MNRKIRNTLIISTLFSISVPVMALKDDTQQPIVVNSEKQSLNLEKNITTFTQNVVVKQGSIDIRADKVVVTRPGGDSKKIVIEAFGNPVTFYQLQDDGKPIKGRGDKMTYEMDKELVTLTGKAYLEQLDSNITGDKITYLVPTQQMEAFSGKGKQVTTVLLPSQLQEKGPGVNNKGK

Flanking regions ( +/- flanking 50bp)

AAAACGTGCAGAGCTGATTGAACAGGTGAACACCTATTATGAGATCCCTAATGAATCGAAAAATCCGTAATACACTAATTATCAGTACGTTATTCTCAATAAGTGTCCCAGTTATGGCACTTAAAGATGATACACAACAACCTATTGTTGTTAATTCCGAGAAACAGTCACTTAATTTAGAAAAAAACATTACCACTTTCACACAAAATGTTGTGGTAAAACAAGGCTCTATTGATATAAGAGCTGATAAAGTAGTGGTTACACGTCCTGGTGGCGATTCTAAAAAAATCGTGATTGAAGCTTTTGGTAACCCTGTGACATTCTATCAGTTACAAGATGATGGTAAACCAATCAAAGGTCGTGGTGATAAAATGACCTATGAGATGGACAAAGAGCTGGTGACCTTAACAGGTAAAGCTTATCTTGAACAATTAGACAGTAATATCACCGGTGATAAAATCACTTATCTCGTACCGACACAACAAATGGAAGCATTTAGCGGTAAGGGAAAACAAGTCACCACCGTTTTACTCCCTTCTCAGTTACAAGAGAAAGGTCCCGGTGTTAACAACAAAGGTAAGTAACACTTTATGGCGCTGTTAAAAGCTGAAAATTTAGCAAAAGCATACAAAGG