COG1934


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG1934, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Lipopolysaccharide export system protein LptA
Function(s) descr. Cell wall/membrane/envelope biogenesis (M)

Occurence in the database

COG1934 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_733 FBDBKF_03240 49358 49894 1 lptA lipopolysaccharide ABC transporter substrate-binding protein LptA Morganella morganii S1
1 group_733 EHELCC_07295 197209 197745 -1 lptA lipopolysaccharide ABC transporter substrate-binding protein LptA Morganella morganii S2
2 group_733 NLDBIP_07620 197082 197618 -1 lptA lipopolysaccharide ABC transporter substrate-binding protein LptA Morganella morganii S4
3 group_733 LHKJJB_07155 160828 161364 -1 lptA lipopolysaccharide ABC transporter substrate-binding protein LptA Morganella morganii S3
4 group_733 HKOGLL_03775 72023 72559 1 lptA lipopolysaccharide ABC transporter substrate-binding protein LptA Morganella morganii S5
5 group_733 F4V73_RS11680 486752 487288 -1 lptA lipopolysaccharide ABC transporter substrate-binding protein LptA Morganella psychrotolerans
6 group_733 PMI_RS18160 3987553 3988086 -1 lptA lipopolysaccharide ABC transporter substrate-binding protein LptA Proteus mirabilis HI4320