Homologs in group_736

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_03255 FBDBKF_03255 74.7 Morganella morganii S1 hpf ribosome hibernation promoting factor
EHELCC_07280 EHELCC_07280 74.7 Morganella morganii S2 hpf ribosome hibernation promoting factor
NLDBIP_07605 NLDBIP_07605 74.7 Morganella morganii S4 hpf ribosome hibernation promoting factor
LHKJJB_07140 LHKJJB_07140 74.7 Morganella morganii S3 hpf ribosome hibernation promoting factor
HKOGLL_03790 HKOGLL_03790 74.7 Morganella morganii S5 hpf ribosome hibernation promoting factor
F4V73_RS11665 F4V73_RS11665 69.5 Morganella psychrotolerans hpf ribosome hibernation promoting factor

Distribution of the homologs in the orthogroup group_736

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_736

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P17161 1.67e-47 149 72 0 95 3 hpf Ribosome hibernation promoting factor Klebsiella oxytoca
P26983 2.87e-46 146 70 0 95 3 hpf Ribosome hibernation promoting factor Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P0AFX3 6.98e-46 145 71 0 95 3 hpf Ribosome hibernation promoting factor Shigella flexneri
P0AFX0 6.98e-46 145 71 0 95 1 hpf Ribosome hibernation promoting factor Escherichia coli (strain K12)
P0AFX1 6.98e-46 145 71 0 95 3 hpf Ribosome hibernation promoting factor Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0AFX2 6.98e-46 145 71 0 95 3 hpf Ribosome hibernation promoting factor Escherichia coli O157:H7
P0A148 4.65e-30 105 58 0 91 3 hpf Ribosome hibernation promoting factor Pseudomonas putida
P0A147 4.65e-30 105 58 0 91 3 hpf Ribosome hibernation promoting factor Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440)
P17160 7.92e-29 102 56 0 91 3 hpf Ribosome hibernation promoting factor Azotobacter vinelandii
P28613 1.9e-16 71 35 1 100 3 hpf Ribosome hibernation promoting factor Cupriavidus necator (strain ATCC 17699 / DSM 428 / KCTC 22496 / NCIMB 10442 / H16 / Stanier 337)
P33987 1.24e-14 66 37 2 99 3 hpf Ribosome hibernation promoting factor Acinetobacter guillouiae
P0AD52 4.84e-13 62 40 1 96 3 yfiA Ribosome-associated factor Y Shigella flexneri
P0AD49 4.84e-13 62 40 1 96 1 raiA Ribosome-associated inhibitor A Escherichia coli (strain K12)
P0AD50 4.84e-13 62 40 1 96 3 yfiA Ribosome-associated factor Y Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0AD51 4.84e-13 62 40 1 96 3 yfiA Ribosome-associated factor Y Escherichia coli O157:H7
Q5XAQ7 3.16e-12 62 38 3 96 1 hpf Ribosome hibernation promotion factor Streptococcus pyogenes serotype M6 (strain ATCC BAA-946 / MGAS10394)
P24694 5.42e-12 59 34 1 78 3 hpf Ribosome hibernation promoting factor (Fragment) Acidithiobacillus ferridurans
A0A0H3GEZ8 8.04e-12 61 40 3 98 1 hpf Ribosome hibernation promotion factor Listeria monocytogenes serotype 1/2a (strain 10403S)
P47995 9.36e-12 60 35 2 98 3 hpf Ribosome hibernation promotion factor Staphylococcus carnosus (strain TM300)
Q9RVE7 3.38e-11 59 35 1 95 1 hpf Ribosome hibernation promotion factor Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / CCUG 27074 / LMG 4051 / NBRC 15346 / NCIMB 9279 / VKM B-1422 / R1)
P74518 4.35e-11 59 36 3 103 3 hpf Ribosome hibernation promotion factor Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
P28368 4.84e-11 59 39 3 98 1 yvyD Ribosome hibernation promotion factor Bacillus subtilis (strain 168)
Q8CTF2 1.89e-10 57 35 3 100 3 hpf Ribosome hibernation promotion factor Staphylococcus epidermidis (strain ATCC 12228 / FDA PCI 1200)
Q5HQX7 1.89e-10 57 35 3 100 3 hpf Ribosome hibernation promotion factor Staphylococcus epidermidis (strain ATCC 35984 / DSM 28319 / BCRC 17069 / CCUG 31568 / BM 3577 / RP62A)
P47908 2e-10 57 38 2 97 2 hpf Ribosome hibernation promotion factor Picosynechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6)
Q7A1G5 3.24e-10 57 32 1 95 3 hpf Ribosome hibernation promotion factor Staphylococcus aureus (strain MW2)
Q6GB78 3.24e-10 57 32 1 95 3 hpf Ribosome hibernation promotion factor Staphylococcus aureus (strain MSSA476)
Q6GIN9 3.24e-10 57 32 1 95 3 hpf Ribosome hibernation promotion factor Staphylococcus aureus (strain MRSA252)
Q7A6R6 3.24e-10 57 32 1 95 1 hpf Ribosome hibernation promotion factor Staphylococcus aureus (strain N315)
Q99VM3 3.24e-10 57 32 1 95 3 hpf Ribosome hibernation promotion factor Staphylococcus aureus (strain Mu50 / ATCC 700699)
Q2YSH7 3.24e-10 57 32 1 95 1 hpf Ribosome hibernation promotion factor Staphylococcus aureus (strain bovine RF122 / ET3-1)
Q2G055 3.24e-10 57 32 1 95 1 hpf Ribosome hibernation promotion factor Staphylococcus aureus (strain NCTC 8325 / PS 47)
Q2FIN9 3.24e-10 57 32 1 95 1 hpf Ribosome hibernation promotion factor Staphylococcus aureus (strain USA300)
Q5HHR8 3.34e-10 57 32 1 95 3 hpf Ribosome hibernation promotion factor Staphylococcus aureus (strain COL)
Q4L4H7 6.28e-10 56 35 3 100 3 hpf Ribosome hibernation promotion factor Staphylococcus haemolyticus (strain JCSC1435)
Q49VV1 1.02e-09 55 35 2 93 3 hpf Ribosome hibernation promotion factor Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229 / NCIMB 8711 / NCTC 7292 / S-41)
A2RIX0 1.28e-09 55 36 3 98 1 hpf Ribosome hibernation promotion factor Lactococcus lactis subsp. cremoris (strain MG1363)
P71346 8.23e-08 49 34 1 96 1 yfiA Ribosome-associated factor Y Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS18145
Feature type CDS
Gene hpf
Product ribosome hibernation promoting factor
Location 3984975 - 3985262 (strand: -1)
Length 288 (nucleotides) / 95 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_736
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF02482 Sigma 54 modulation protein / S30EA ribosomal protein

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1544 Translation, ribosomal structure and biogenesis (J) J Ribosome-associated translation inhibitor RaiA

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K05808 ribosome hibernation promoting factor - -

Protein Sequence

MELQITGHNIELTDALRDTVKAKSAKLPQFFDKINNVQVILKVEKVTKIAEATIQVNGGELHASAEAEDMYAAIDGLMDKLARQLTKHKDKLRQH

Flanking regions ( +/- flanking 50bp)

TCAAATCAACGTAAAGAGTTGGTTTGAGCATAATTGAGAAGGAAGACACTATGGAACTTCAAATCACTGGTCATAATATTGAATTAACTGATGCTCTGCGTGATACCGTCAAAGCAAAAAGCGCTAAATTACCTCAGTTCTTTGACAAAATTAATAACGTCCAAGTTATCCTCAAAGTCGAAAAAGTGACTAAAATTGCGGAAGCGACGATTCAAGTAAATGGCGGTGAATTACATGCCTCTGCGGAAGCAGAAGATATGTACGCAGCAATTGATGGATTAATGGATAAACTGGCTCGTCAATTAACCAAACACAAAGATAAACTGAGACAACATTAATTCATTTCCCATTGTAAAATGGGAATACAATCGGCGATGTTAGGGTGTTA