Homologs in group_2224

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_17010 FBDBKF_17010 66.9 Morganella morganii S1 hipB Transcriptional regulator, contains XRE-family HTH domain
EHELCC_16580 EHELCC_16580 66.9 Morganella morganii S2 hipB Transcriptional regulator, contains XRE-family HTH domain
NLDBIP_16790 NLDBIP_16790 66.9 Morganella morganii S4 hipB Transcriptional regulator, contains XRE-family HTH domain
LHKJJB_16680 LHKJJB_16680 66.9 Morganella morganii S3 hipB Transcriptional regulator, contains XRE-family HTH domain
HKOGLL_17645 HKOGLL_17645 66.9 Morganella morganii S5 hipB Transcriptional regulator, contains XRE-family HTH domain
F4V73_RS18470 F4V73_RS18470 66.3 Morganella psychrotolerans - XRE family transcriptional regulator

Distribution of the homologs in the orthogroup group_2224

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2224

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P77626 2.62e-14 70 30 2 156 1 sutR HTH-type transcriptional regulator SutR Escherichia coli (strain K12)
O32237 1.73e-05 46 35 1 62 4 rghRB Uncharacterized HTH-type transcriptional regulator RghRB Bacillus subtilis (strain 168)
C1D3U5 6.16e-05 44 36 0 60 1 ddrOP3 HTH-type transcriptional regulator DdrOP3 Deinococcus deserti (strain DSM 17065 / CIP 109153 / LMG 22923 / VCD115)
P06153 6.47e-05 44 33 0 60 1 None Immunity repressor protein Bacillus phage phi105
P06533 0.000176 42 34 1 61 1 sinR HTH-type transcriptional regulator SinR Bacillus subtilis (strain 168)
P23939 0.000261 41 35 1 64 4 None Control protein C.BamHI Bacillus amyloliquefaciens
P22753 0.000263 42 34 1 61 4 sinR HTH-type transcriptional regulator SinR Bacillus licheniformis
O32236 0.000265 42 36 1 58 1 rghR HTH-type transcriptional repressor RghR Bacillus subtilis (strain 168)
P9WMI3 0.000304 43 36 0 61 1 Rv0023 Uncharacterized HTH-type transcriptional regulator Rv0023 Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WMI2 0.000304 43 36 0 61 4 MT0026 Uncharacterized HTH-type transcriptional regulator MT0026 Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
P67705 0.000304 43 36 0 61 4 BQ2027_MB0023 Uncharacterized HTH-type transcriptional regulator Mb0023 Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)
P71049 0.000347 42 34 1 61 4 slrR HTH-type transcriptional regulator SlrR Bacillus subtilis (strain 168)
P55409 0.000396 40 36 0 65 4 NGR_a04070 Uncharacterized HTH-type transcriptional regulator y4dJ Sinorhizobium fredii (strain NBRC 101917 / NGR234)
O31834 0.000769 40 41 1 56 4 yozG Uncharacterized HTH-type transcriptional regulator YozG Bacillus subtilis (strain 168)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS17505
Feature type CDS
Gene -
Product XRE family transcriptional regulator
Location 3841740 - 3842318 (strand: -1)
Length 579 (nucleotides) / 192 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_2224
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF01381 Helix-turn-helix
PF07883 Cupin domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1396 Transcription (K) K Transcriptional regulator, contains XRE-family HTH domain

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K23779 XRE family transcriptional regulator, regulator of sulfur utilization - -

Protein Sequence

MNPQSPKKTNEYLGNKVKQLRQSRNLSLNELSRKSGISKAALSKLESGDSNPRIDTLEAIAIALGFPLGDLFSFTREEYPRLERHKPIVGDYAQEFKFRIGIGNITEIWHIEMKHGAIINSPAHADGTQEHIMVYSGKLMMRFANDETVLLETGDFYAFHGNAPHSYICVEGHMRASVIMSSPNQQHYHHRP

Flanking regions ( +/- flanking 50bp)

ATCATCTACAGGAAATTATACTTTTAAACTGACAATATTTTGAATTGGCAATGAACCCACAATCACCGAAAAAGACAAACGAATACCTTGGTAATAAGGTTAAGCAGTTAAGACAATCTCGAAACTTGTCACTTAATGAGTTATCAAGAAAATCAGGCATATCTAAAGCGGCATTGTCCAAATTAGAGTCTGGCGATTCTAATCCTCGCATCGATACCTTAGAAGCTATCGCGATAGCCCTTGGATTTCCATTAGGTGATTTATTTAGTTTTACCCGCGAAGAATATCCTCGCTTAGAGCGACATAAGCCTATCGTTGGCGACTATGCACAAGAATTTAAATTCCGTATTGGCATCGGCAATATTACTGAAATTTGGCATATTGAGATGAAGCACGGGGCAATTATTAATAGCCCAGCCCATGCCGACGGCACCCAAGAGCATATTATGGTCTATTCTGGCAAACTGATGATGCGTTTTGCTAACGATGAAACCGTATTATTAGAAACCGGCGATTTTTATGCCTTTCATGGTAATGCGCCACACTCTTATATTTGTGTAGAAGGCCATATGCGTGCATCAGTTATCATGTCTAGCCCCAATCAACAACACTATCATCATCGCCCTTAAGACAAATACCCATTATATTTCACCGCCATTTAAACTATTATTCTAAGTAT