Homologs in group_2224

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_17010 FBDBKF_17010 97.3 Morganella morganii S1 hipB Transcriptional regulator, contains XRE-family HTH domain
EHELCC_16580 EHELCC_16580 97.3 Morganella morganii S2 hipB Transcriptional regulator, contains XRE-family HTH domain
NLDBIP_16790 NLDBIP_16790 97.3 Morganella morganii S4 hipB Transcriptional regulator, contains XRE-family HTH domain
LHKJJB_16680 LHKJJB_16680 97.3 Morganella morganii S3 hipB Transcriptional regulator, contains XRE-family HTH domain
HKOGLL_17645 HKOGLL_17645 97.3 Morganella morganii S5 hipB Transcriptional regulator, contains XRE-family HTH domain
PMI_RS17505 PMI_RS17505 66.3 Proteus mirabilis HI4320 - XRE family transcriptional regulator

Distribution of the homologs in the orthogroup group_2224

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2224

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P77626 1.13e-11 63 26 2 162 1 sutR HTH-type transcriptional regulator SutR Escherichia coli (strain K12)
O32237 7.36e-08 52 32 3 106 4 rghRB Uncharacterized HTH-type transcriptional regulator RghRB Bacillus subtilis (strain 168)
P71049 2.97e-06 48 35 1 70 4 slrR HTH-type transcriptional regulator SlrR Bacillus subtilis (strain 168)
O32236 7.4e-05 44 35 1 56 1 rghR HTH-type transcriptional repressor RghR Bacillus subtilis (strain 168)
P15017 0.00012 43 32 0 78 4 None Uncharacterized transcriptional regulator in ATPase CF(0) region Rhodospirillum rubrum
C1CYP4 0.000141 43 35 1 70 1 ddrOC HTH-type transcriptional regulator DdrOC Deinococcus deserti (strain DSM 17065 / CIP 109153 / LMG 22923 / VCD115)
P04132 0.000257 42 32 0 75 1 C Repressor protein C Escherichia phage P2
P06153 0.000867 41 36 0 52 1 None Immunity repressor protein Bacillus phage phi105

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS18470
Feature type CDS
Gene -
Product XRE family transcriptional regulator
Location 30348 - 30905 (strand: 1)
Length 558 (nucleotides) / 185 (amino acids)

Contig

Accession term accessions NZ_VXKB01000009 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 74461 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2224
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF01381 Helix-turn-helix

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1396 Transcription (K) K Transcriptional regulator, contains XRE-family HTH domain

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K23779 XRE family transcriptional regulator, regulator of sulfur utilization - -

Protein Sequence

MHKTSAHIGQKVKLLRQARNLSLNDLSKLSGISKAALSKLESGDSNPRIDTLEAIAVALRFPLGDLFTASNEGYPRYEQNKTFKGEYAEDFKFRVGMGNISEIWHLKMIRGAIINSPAHSTGTHEHILIHQGTLMMRFNEDLTVLLEPGDFYAFSCDIPHSYICMEGELSGTLVMSYSHIGQTSP

Flanking regions ( +/- flanking 50bp)

TGCAATACTAACAGGATTATCCTGCTGACTTCATTGGTATCCATTCAATTATGCATAAAACCAGTGCCCATATCGGCCAGAAAGTGAAACTGCTGCGCCAGGCGCGTAACCTGTCGCTTAATGACCTTTCAAAACTCTCCGGCATCTCGAAAGCCGCATTATCCAAACTGGAATCCGGTGATTCCAATCCGCGCATCGATACCCTGGAAGCCATCGCCGTTGCTCTGCGTTTTCCGCTGGGTGATTTGTTTACCGCAAGTAATGAAGGTTATCCCCGCTACGAACAAAACAAAACGTTCAAAGGGGAGTATGCAGAAGATTTTAAATTCCGTGTCGGAATGGGGAATATTTCTGAGATCTGGCACCTGAAAATGATCCGTGGCGCGATTATTAACAGCCCGGCGCACAGTACCGGCACTCACGAACACATCCTTATCCATCAGGGCACACTGATGATGCGCTTTAATGAGGATCTCACTGTCCTGCTGGAACCGGGTGATTTCTATGCCTTTTCCTGTGATATTCCCCACTCCTATATCTGCATGGAAGGGGAACTGAGCGGCACGCTGGTTATGTCCTATTCACATATAGGACAAACTTCACCGTAGTAACATTCTATACCCGACGTCATTCAGGATGCAGGCTGACAGCAGCCCGG