Homologs in group_1416

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_08750 FBDBKF_08750 86.7 Morganella morganii S1 rlhA 23S rRNA C2501 and tRNA U34 5'-hydroxylation protein RlhA/YrrN/YrrO, U32 peptidase family
EHELCC_12775 EHELCC_12775 86.7 Morganella morganii S2 rlhA 23S rRNA C2501 and tRNA U34 5'-hydroxylation protein RlhA/YrrN/YrrO, U32 peptidase family
NLDBIP_13115 NLDBIP_13115 86.7 Morganella morganii S4 rlhA 23S rRNA C2501 and tRNA U34 5'-hydroxylation protein RlhA/YrrN/YrrO, U32 peptidase family
LHKJJB_13440 LHKJJB_13440 86.7 Morganella morganii S3 rlhA 23S rRNA C2501 and tRNA U34 5'-hydroxylation protein RlhA/YrrN/YrrO, U32 peptidase family
HKOGLL_11590 HKOGLL_11590 86.7 Morganella morganii S5 rlhA 23S rRNA C2501 and tRNA U34 5'-hydroxylation protein RlhA/YrrN/YrrO, U32 peptidase family
F4V73_RS09965 F4V73_RS09965 86.7 Morganella psychrotolerans - peptidase U32 family protein

Distribution of the homologs in the orthogroup group_1416

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1416

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P45527 0.0 600 84 0 331 1 ubiU Ubiquinone biosynthesis protein UbiU Escherichia coli (strain K12)
Q57555 3.48e-44 159 32 10 298 3 MJ0090 Uncharacterized protease MJ0090 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
O32034 1.02e-41 153 32 10 319 3 trhP1 tRNA hydroxylation protein P1 Bacillus subtilis (strain 168)
P56113 7.57e-35 134 32 10 298 3 trhP tRNA hydroxylation protein P Helicobacter pylori (strain ATCC 700392 / 26695)
Q9ZMR3 1.98e-34 133 31 10 298 3 trhP tRNA hydroxylation protein P Helicobacter pylori (strain J99 / ATCC 700824)
P44700 2.3e-34 134 29 11 323 3 trhP tRNA hydroxylation protein P Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P76403 5.88e-33 130 30 11 320 1 trhP tRNA hydroxylation protein P Escherichia coli (strain K12)
P59916 1.4e-31 125 28 8 326 3 prtC Collagenase Porphyromonas gingivalis (strain ATCC BAA-308 / W83)
P76104 2.93e-26 112 30 9 294 1 rlhA 23S rRNA 5-hydroxycytidine C2501 synthase Escherichia coli (strain K12)
O32035 5.76e-20 92 22 7 315 3 trhP2 tRNA hydroxylation protein P2 Bacillus subtilis (strain 168)
P33437 1.64e-14 77 24 6 266 1 prtC Collagenase (Fragment) Porphyromonas gingivalis

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS17155
Feature type CDS
Gene -
Product peptidase U32 family protein
Location 3773416 - 3774411 (strand: -1)
Length 996 (nucleotides) / 331 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_1416
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF01136 Peptidase family U32

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0826 Translation, ribosomal structure and biogenesis (J) J 23S rRNA C2501 and tRNA U34 5'-hydroxylation protein RlhA/YrrN/YrrO, U32 peptidase family

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K24844 O2-independent ubiquinone biosynthesis protein UbiU - -

Protein Sequence

MELLCPAGNLPALKAAVDNGADAVYIGLKDDTNARHFAGLNFTEKKLQEAVNYVHRHQRKLHIAINTFAHPDGFERWQKAIDMAAHLGADALILADIAMLEYAAERYPQIERHVSVQASATNTQAIAFYQRNFDVARIVLPRVLSIHQVKQLAQSSPVPLEVFAFGSLCIMAEGRCYLSSYLTGESPNTVGACSPARFVRWQQTPQGMESRLNDVLIDRYAPDENAGYPTLCKGRYFVDKHCYHALEEPTSLNTLALLPELMAMNIASVKIEGRQRSPAYVTEVARVWRAAIDQCKKDPQGFKTQPRWMSALGKISEGTQTTLGAYHRKWQ

Flanking regions ( +/- flanking 50bp)

CCTGCTTATTACAATTTCTGATCATTTTTAATCTCTAAAGGGAAGTGAAGATGGAATTGTTGTGCCCAGCAGGTAACTTACCCGCATTAAAAGCCGCTGTTGATAATGGTGCAGATGCCGTTTATATCGGCTTAAAAGATGACACCAATGCTCGCCATTTTGCTGGCTTAAACTTCACAGAAAAGAAATTGCAAGAAGCCGTCAATTACGTACATCGCCACCAGCGAAAACTGCATATTGCCATTAATACTTTTGCTCATCCTGATGGATTTGAACGCTGGCAAAAAGCCATTGATATGGCGGCTCATTTAGGTGCCGATGCATTAATTTTGGCCGATATTGCTATGCTAGAGTACGCAGCTGAACGCTATCCACAGATAGAGCGTCATGTATCGGTACAGGCGTCGGCCACTAATACTCAGGCAATCGCATTTTATCAACGCAATTTTGATGTTGCACGTATTGTACTACCACGCGTTCTTTCTATTCATCAAGTCAAACAATTGGCTCAAAGTAGTCCTGTTCCTTTAGAAGTCTTTGCCTTTGGTAGTTTGTGCATCATGGCTGAAGGACGCTGTTATCTTTCCTCTTATCTAACTGGTGAATCGCCTAATACTGTCGGAGCCTGTTCCCCAGCTCGTTTTGTCCGTTGGCAGCAAACACCACAAGGTATGGAATCTCGCCTCAATGATGTCTTAATAGACCGTTATGCTCCTGATGAAAATGCAGGGTATCCTACTTTATGTAAAGGACGTTATTTTGTTGATAAACACTGCTATCACGCCTTAGAAGAGCCAACCAGCTTAAATACACTAGCGCTACTACCTGAACTTATGGCTATGAATATTGCCTCTGTCAAAATTGAAGGTCGCCAACGTAGCCCCGCGTATGTTACTGAAGTTGCAAGAGTATGGCGTGCAGCTATTGACCAATGTAAAAAAGATCCTCAAGGTTTTAAAACCCAACCGCGTTGGATGAGTGCATTAGGAAAAATATCTGAAGGAACACAAACAACATTAGGTGCTTACCACCGGAAATGGCAATAATAAGGGATAATAATATGAAATACGCATTAGGCTCTGTACTTTATTATTGG