Homologs in group_191

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8 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_08800 FBDBKF_08800 52.4 Morganella morganii S1 ridA 2-iminobutanoate/2-iminopropanoate deaminase
EHELCC_12725 EHELCC_12725 52.4 Morganella morganii S2 ridA 2-iminobutanoate/2-iminopropanoate deaminase
NLDBIP_13065 NLDBIP_13065 52.4 Morganella morganii S4 ridA 2-iminobutanoate/2-iminopropanoate deaminase
LHKJJB_13490 LHKJJB_13490 52.4 Morganella morganii S3 ridA 2-iminobutanoate/2-iminopropanoate deaminase
HKOGLL_11540 HKOGLL_11540 52.4 Morganella morganii S5 ridA 2-iminobutanoate/2-iminopropanoate deaminase
F4V73_RS10020 F4V73_RS10020 50.0 Morganella psychrotolerans ridA 2-iminobutanoate/2-iminopropanoate deaminase
PMI_RS05960 PMI_RS05960 30.3 Proteus mirabilis HI4320 - RidA family protein
PMI_RS17210 PMI_RS17210 45.2 Proteus mirabilis HI4320 - RidA family protein

Distribution of the homologs in the orthogroup group_191

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_191

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q9UZA3 1.42e-43 142 54 1 124 3 PYRAB12510 RutC family protein PYRAB12510 Pyrococcus abyssi (strain GE5 / Orsay)
O58584 4.55e-42 138 52 1 124 1 PH0854 RutC family protein PH0854 Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
Q8U308 5.25e-42 137 52 1 124 1 ridA 2-iminobutanoate/2-iminopropanoate deaminase Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)
Q97U19 1.74e-40 134 52 1 123 3 SSO3206 RutC family protein SSO3206 Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2)
O25598 1.4e-38 129 48 1 123 3 HP_0944 RutC family protein HP_0944 Helicobacter pylori (strain ATCC 700392 / 26695)
P0AF95 3.02e-38 128 52 2 125 3 yjgF 2-iminobutanoate/2-iminopropanoate deaminase Shigella flexneri
P0AF93 3.02e-38 128 52 2 125 1 ridA 2-iminobutanoate/2-iminopropanoate deaminase Escherichia coli (strain K12)
P0AF94 3.02e-38 128 52 2 125 3 yjgF 2-iminobutanoate/2-iminopropanoate deaminase Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
Q9ZKQ6 9.28e-38 127 47 1 123 3 jhp_0879 RutC family protein jhp_0879 Helicobacter pylori (strain J99 / ATCC 700824)
Q7CP78 3.93e-37 125 49 2 125 1 ridA 2-iminobutanoate/2-iminopropanoate deaminase Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P37552 2.9e-36 123 51 2 123 1 ridA 2-iminobutanoate/2-iminopropanoate deaminase Bacillus subtilis (strain 168)
P44839 2.92e-36 123 51 2 128 1 HI_0719 RutC family protein HI_0719 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
O34133 3.19e-36 123 51 1 124 3 aldR Putative regulator AldR Lactococcus lactis subsp. lactis (strain IL1403)
Q9L6B5 2.31e-35 121 50 2 126 3 PM1466 RutC family protein PM1466 Pasteurella multocida (strain Pm70)
P52761 2.93e-33 115 42 1 122 3 slr0709 RutC family protein slr0709 Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
Q8K9H7 3.92e-33 115 46 2 127 3 BUsg_359 RutC family protein BUsg_359 Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
P0AGL4 1.53e-32 114 45 2 125 3 tdcF Putative reactive intermediate deaminase TdcF Shigella flexneri
P0AGL2 1.53e-32 114 45 2 125 1 tdcF Putative reactive intermediate deaminase TdcF Escherichia coli (strain K12)
P0AGL3 1.53e-32 114 45 2 125 3 tdcF Putative reactive intermediate deaminase TdcF Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
Q973T6 2.4e-32 113 46 1 120 1 STK_08110 RutC family protein STK_08110 Sulfurisphaera tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7)
A0A1J1DL12 4.42e-32 112 44 1 120 1 MAG133 2-iminobutanoate/2-iminopropanoate deaminase Dermatophagoides farinae
P57452 8.6e-32 112 47 2 126 3 BU371 RutC family protein BU371 Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS)
P52760 1.09e-29 107 41 1 123 1 Rida 2-iminobutanoate/2-iminopropanoate deaminase Mus musculus
Q10121 1.33e-29 107 42 2 122 3 C23G10.2 RutC family protein C23G10.2 Caenorhabditis elegans
P55654 1.62e-28 103 42 1 119 3 NGR_a01620 RutC family protein y4sK Sinorhizobium fredii (strain NBRC 101917 / NGR234)
P52758 2.93e-28 103 41 1 123 1 RIDA 2-iminobutanoate/2-iminopropanoate deaminase Homo sapiens
Q3T114 8.52e-28 102 40 1 123 2 RIDA 2-iminobutanoate/2-iminopropanoate deaminase Bos taurus
Q89AG0 9.49e-28 101 42 2 124 3 bbp_334 RutC family protein bbp_334 Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp)
P52759 1.41e-27 101 41 1 123 1 Rida 2-iminobutanoate/2-iminopropanoate deaminase Rattus norvegicus
P80601 1.79e-27 101 40 1 123 1 RIDA 2-iminobutanoate/2-iminopropanoate deaminase Capra hircus
Q9V3W0 5.05e-27 100 37 1 121 2 UK114 RutC family protein UK114 Drosophila melanogaster
O52178 4.37e-26 97 39 2 122 3 dfrA Protein DfrA Myxococcus xanthus
P40431 5.66e-26 97 39 1 120 3 None RutC family protein in vnfA 5'region Azotobacter vinelandii
P97117 1.42e-25 96 39 1 126 3 None RutC family protein in leuC 5'region Leuconostoc mesenteroides subsp. cremoris
Q94JQ4 2.33e-25 97 39 1 121 1 RIDA Reactive Intermediate Deaminase A, chloroplastic Arabidopsis thaliana
P40185 1.29e-24 94 39 2 123 1 MMF1 Protein MMF1, mitochondrial Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
O66689 5.64e-22 87 39 2 123 3 aq_364 RutC family protein aq_364 Aquifex aeolicus (strain VF5)
Q6FFZ5 1.85e-21 85 33 1 122 3 rutC 3-aminoacrylate deaminase RutC Acinetobacter baylyi (strain ATCC 33305 / BD413 / ADP1)
A8IAD2 7.29e-20 81 34 1 114 3 rutC 3-aminoacrylate deaminase RutC Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 / LMG 6465 / NBRC 14845 / NCIMB 13405 / ORS 571)
D5CE34 1.03e-19 81 34 2 118 3 rutC 3-aminoacrylate deaminase RutC Enterobacter cloacae subsp. cloacae (strain ATCC 13047 / DSM 30054 / NBRC 13535 / NCTC 10005 / WDCM 00083 / NCDC 279-56)
P40037 2.89e-19 80 39 2 107 1 HMF1 Protein HMF1 Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
B7N3G6 5.64e-19 79 33 2 118 3 rutC 3-aminoacrylate deaminase RutC Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC)
Q32HQ1 1.46e-18 78 32 2 118 3 rutC 3-aminoacrylate deaminase RutC Shigella dysenteriae serotype 1 (strain Sd197)
Q1RDK7 1.46e-18 78 32 2 118 3 rutC 3-aminoacrylate deaminase RutC Escherichia coli (strain UTI89 / UPEC)
B1LIZ5 1.46e-18 78 32 2 118 3 rutC 3-aminoacrylate deaminase RutC Escherichia coli (strain SMS-3-5 / SECEC)
D2NGI7 1.46e-18 78 32 2 118 3 rutC 3-aminoacrylate deaminase RutC Escherichia coli O150:H5 (strain SE15)
P0AFQ5 1.46e-18 78 32 2 118 1 rutC 3-aminoacrylate deaminase RutC Escherichia coli (strain K12)
B1IV87 1.46e-18 78 32 2 118 3 rutC 3-aminoacrylate deaminase RutC Escherichia coli (strain ATCC 8739 / DSM 1576 / NBRC 3972 / NCIMB 8545 / WDCM 00012 / Crooks)
P0AFQ6 1.46e-18 78 32 2 118 1 rutC 3-aminoacrylate deaminase RutC Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
Q0TJ57 1.46e-18 78 32 2 118 3 rutC 3-aminoacrylate deaminase RutC Escherichia coli O6:K15:H31 (strain 536 / UPEC)
D5CZH0 1.46e-18 78 32 2 118 3 rutC 3-aminoacrylate deaminase RutC Escherichia coli O18:K1:H7 (strain IHE3034 / ExPEC)
A1A9R5 1.46e-18 78 32 2 118 3 rutC 3-aminoacrylate deaminase RutC Escherichia coli O1:K1 / APEC
A7ZYW5 1.46e-18 78 32 2 118 3 rutC 3-aminoacrylate deaminase RutC Escherichia coli O9:H4 (strain HS)
B1X9D1 1.46e-18 78 32 2 118 3 rutC 3-aminoacrylate deaminase RutC Escherichia coli (strain K12 / DH10B)
C9QZ66 1.46e-18 78 32 2 118 3 rutC 3-aminoacrylate deaminase RutC Escherichia coli (strain ATCC 33849 / DSM 4235 / NCIMB 12045 / K12 / DH1)
C4ZQD8 1.46e-18 78 32 2 118 3 rutC 3-aminoacrylate deaminase RutC Escherichia coli (strain K12 / MC4100 / BW2952)
C6UFC1 1.46e-18 78 32 2 118 3 rutC 3-aminoacrylate deaminase RutC Escherichia coli (strain B / REL606)
C6EHJ7 1.46e-18 78 32 2 118 3 rutC 3-aminoacrylate deaminase RutC Escherichia coli (strain B / BL21-DE3)
B7M8Z5 1.46e-18 78 32 2 118 3 rutC 3-aminoacrylate deaminase RutC Escherichia coli O8 (strain IAI1)
B7MTF3 1.46e-18 78 32 2 118 3 rutC 3-aminoacrylate deaminase RutC Escherichia coli O81 (strain ED1a)
B7NLB6 1.46e-18 78 32 2 118 3 rutC 3-aminoacrylate deaminase RutC Escherichia coli O7:K1 (strain IAI39 / ExPEC)
B7MIF7 1.46e-18 78 32 2 118 3 rutC 3-aminoacrylate deaminase RutC Escherichia coli O45:K1 (strain S88 / ExPEC)
D3H123 1.46e-18 78 32 2 118 3 rutC 3-aminoacrylate deaminase RutC Escherichia coli O44:H18 (strain 042 / EAEC)
B7UNZ3 1.46e-18 78 32 2 118 3 rutC 3-aminoacrylate deaminase RutC Escherichia coli O127:H6 (strain E2348/69 / EPEC)
A7ZKB5 1.46e-18 78 32 2 118 3 rutC 3-aminoacrylate deaminase RutC Escherichia coli O139:H28 (strain E24377A / ETEC)
C8U5H2 1.46e-18 78 32 2 118 3 rutC 3-aminoacrylate deaminase RutC Escherichia coli O103:H2 (strain 12009 / EHEC)
B6I986 2.35e-18 77 32 2 118 3 rutC 3-aminoacrylate deaminase RutC Escherichia coli (strain SE11)
C5B0U7 2.72e-18 77 32 1 112 3 rutC 3-aminoacrylate deaminase RutC Methylorubrum extorquens (strain ATCC 14718 / DSM 1338 / JCM 2805 / NCIMB 9133 / AM1)
O43003 2.81e-18 78 40 3 115 3 mmf1 Protein mmf1, mitochondrial Schizosaccharomyces pombe (strain 972 / ATCC 24843)
A4W923 3.08e-18 77 32 2 118 3 rutC 3-aminoacrylate deaminase RutC Enterobacter sp. (strain 638)
A9W3H9 3.57e-18 77 31 1 112 3 rutC 3-aminoacrylate deaminase RutC Methylorubrum extorquens (strain PA1)
C7CM34 3.57e-18 77 31 1 112 3 rutC 3-aminoacrylate deaminase RutC Methylorubrum extorquens (strain DSM 6343 / CIP 106787 / DM4)
B7KWT5 3.57e-18 77 31 1 112 3 rutC 3-aminoacrylate deaminase RutC Methylorubrum extorquens (strain CM4 / NCIMB 13688)
Q7CWX2 3.59e-18 77 32 2 118 3 rutC 3-aminoacrylate deaminase RutC Agrobacterium fabrum (strain C58 / ATCC 33970)
D4GEU6 3.66e-18 77 33 1 112 3 rutC 3-aminoacrylate deaminase RutC Pantoea ananatis (strain LMG 20103)
A7ME54 4.09e-18 77 32 2 118 3 rutC 3-aminoacrylate deaminase RutC Cronobacter sakazakii (strain ATCC BAA-894)
B7LFC0 4.91e-18 77 32 2 118 3 rutC 3-aminoacrylate deaminase RutC Escherichia coli (strain 55989 / EAEC)
C8TNC0 4.91e-18 77 32 2 118 3 rutC 3-aminoacrylate deaminase RutC Escherichia coli O26:H11 (strain 11368 / EHEC)
C8UMM6 4.91e-18 77 32 2 118 3 rutC 3-aminoacrylate deaminase RutC Escherichia coli O111:H- (strain 11128 / EHEC)
A6T7A0 4.94e-18 77 32 2 118 3 rutC 3-aminoacrylate deaminase RutC Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578)
B1ZB17 5.27e-18 77 31 1 112 3 rutC 3-aminoacrylate deaminase RutC Methylorubrum populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001)
D3RKL2 7.21e-18 76 32 1 112 3 rutC 3-aminoacrylate deaminase RutC Klebsiella variicola (strain At-22)
D3QPK3 7.24e-18 76 31 2 118 3 rutC 3-aminoacrylate deaminase RutC Escherichia coli O55:H7 (strain CB9615 / EPEC)
Q8XAU5 7.24e-18 76 31 2 118 3 rutC 3-aminoacrylate deaminase RutC Escherichia coli O157:H7
B5XXN2 8.03e-18 76 32 1 112 3 rutC 3-aminoacrylate deaminase RutC Klebsiella pneumoniae (strain 342)
D0LI57 9.65e-18 76 31 1 121 3 rutC 3-aminoacrylate deaminase RutC Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2)
Q48MQ6 1.24e-17 75 31 1 112 3 rutC 3-aminoacrylate deaminase RutC Pseudomonas savastanoi pv. phaseolicola (strain 1448A / Race 6)
C9Y0S5 1.48e-17 75 30 1 123 3 rutC 3-aminoacrylate deaminase RutC Cronobacter turicensis (strain DSM 18703 / CCUG 55852 / LMG 23827 / z3032)
A1JMX4 2.16e-17 75 30 1 122 3 rutC 3-aminoacrylate deaminase RutC Yersinia enterocolitica serotype O:8 / biotype 1B (strain NCTC 13174 / 8081)
Q4ZXR9 3.85e-17 74 31 2 118 3 rutC 3-aminoacrylate deaminase RutC Pseudomonas syringae pv. syringae (strain B728a)
B1M5I6 4.12e-17 74 30 1 112 3 rutC 3-aminoacrylate deaminase RutC Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831 / NBRC 15690 / NCIMB 10815 / 0-1)
Q83LK7 5.64e-17 74 31 2 118 3 rutC 3-aminoacrylate deaminase RutC Shigella flexneri
Q0T624 5.64e-17 74 31 2 118 3 rutC 3-aminoacrylate deaminase RutC Shigella flexneri serotype 5b (strain 8401)
D2AC41 5.64e-17 74 31 2 118 3 rutC 3-aminoacrylate deaminase RutC Shigella flexneri serotype X (strain 2002017)
C5CN81 6.05e-17 74 32 1 112 3 rutC 3-aminoacrylate deaminase RutC Variovorax paradoxus (strain S110)
A8GCT4 1.08e-16 73 28 1 122 3 rutC 3-aminoacrylate deaminase RutC Serratia proteamaculans (strain 568)
B9JLT7 1.13e-16 73 29 1 122 3 rutC 3-aminoacrylate deaminase RutC Rhizobium rhizogenes (strain K84 / ATCC BAA-868)
A4VQH6 1.68e-16 73 31 1 112 3 rutC 3-aminoacrylate deaminase RutC Stutzerimonas stutzeri (strain A1501)
B0SW61 3.42e-16 72 28 1 112 3 rutC 3-aminoacrylate deaminase RutC Caulobacter sp. (strain K31)
D5VGV2 1.39e-15 70 28 1 112 3 rutC 3-aminoacrylate deaminase RutC Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC 15250 / LMG 17158 / TK0059)
B8H1Q2 4.69e-15 69 26 1 122 3 rutC 3-aminoacrylate deaminase RutC Caulobacter vibrioides (strain NA1000 / CB15N)
Q9A4N4 4.69e-15 69 26 1 122 3 rutC 3-aminoacrylate deaminase RutC Caulobacter vibrioides (strain ATCC 19089 / CIP 103742 / CB 15)
Q9UR06 2.81e-14 67 35 3 113 3 mmf2 Protein mmf2, mitochondrial Schizosaccharomyces pombe (strain 972 / ATCC 24843)
Q9KWS2 4.99e-13 64 29 4 123 1 amnD 2-aminomuconate deaminase Pseudomonas sp.
P39332 1.73e-05 44 28 2 97 1 yjgH RutC family protein YjgH Escherichia coli (strain K12)
P0AEB9 3.18e-05 43 23 2 113 3 yoaB RutC family protein YoaB Shigella flexneri
P0AEB7 3.18e-05 43 23 2 113 3 yoaB RutC family protein YoaB Escherichia coli (strain K12)
P0AEB8 3.18e-05 43 23 2 113 3 yoaB RutC family protein YoaB Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
Q12429 0.000537 41 24 2 112 1 DPH6 Diphthine--ammonia ligase Saccharomyces cerevisiae (strain ATCC 204508 / S288c)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS17070
Feature type CDS
Gene -
Product RidA family protein
Location 3756944 - 3757321 (strand: 1)
Length 378 (nucleotides) / 125 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_191
Orthogroup size 9
N. genomes 7

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Genomic region

Domains

PF01042 Endoribonuclease L-PSP

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0251 Defense mechanisms (V) V Enamine deaminase RidA, house cleaning of reactive enamine intermediates, YjgF/YER057c/UK114 family

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K09022 2-iminobutanoate/2-iminopropanoate deaminase [EC:3.5.99.10] - -

Protein Sequence

MIINTTSAPEAIGPYSQAIKVENHIYISGCCPFNTHDGSVMGNDIETQTLKAMNNLKAIIEAAGASMDDIVKTTCFIKDIKDFPIFNNIYSSFFTSGKYPARSCVEVSRLPKDVLIEIEAIAYKK

Flanking regions ( +/- flanking 50bp)

AATATTGTTATTAATATATAAAAATAGTTATCAAATATTGGAGTGATCTCATGATTATTAATACTACATCAGCACCAGAAGCTATTGGTCCTTATTCACAAGCAATTAAAGTTGAAAATCATATTTATATTTCAGGTTGTTGCCCATTCAATACTCATGATGGTTCTGTTATGGGAAATGATATTGAAACACAAACATTAAAAGCTATGAATAATTTAAAAGCTATTATAGAAGCTGCCGGTGCATCAATGGATGATATTGTTAAAACGACTTGTTTTATTAAAGATATAAAAGATTTTCCTATTTTTAATAATATTTATTCTTCTTTTTTTACATCAGGAAAATACCCAGCTCGTTCATGTGTGGAAGTTTCTCGTCTACCTAAAGATGTTTTAATTGAAATAGAAGCTATCGCTTATAAAAAATAGGAAATATGATCATGAATAAATGGGGAAAATTATGTTTTCTTATTTTGGGT