Homologs in group_214

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8 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_14170 FBDBKF_14170 27.8 Morganella morganii S1 hexA transcriptional regulator HexA
EHELCC_08110 EHELCC_08110 27.8 Morganella morganii S2 hexA transcriptional regulator HexA
NLDBIP_08435 NLDBIP_08435 27.8 Morganella morganii S4 hexA transcriptional regulator HexA
LHKJJB_05830 LHKJJB_05830 27.8 Morganella morganii S3 hexA transcriptional regulator HexA
HKOGLL_05085 HKOGLL_05085 27.8 Morganella morganii S5 hexA transcriptional regulator HexA
F4V73_RS02765 F4V73_RS02765 28.2 Morganella psychrotolerans hexA transcriptional regulator HexA
PMI_RS03100 PMI_RS03100 30.3 Proteus mirabilis HI4320 - LysR family transcriptional regulator
PMI_RS08650 PMI_RS08650 28.2 Proteus mirabilis HI4320 hexA transcriptional regulator HexA

Distribution of the homologs in the orthogroup group_214

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_214

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P67660 4.76e-10 62 24 11 290 1 yhaJ Probable HTH-type transcriptional regulator YhaJ Escherichia coli (strain K12)
P67661 4.76e-10 62 24 11 290 1 yhaJ HTH-type transcriptional regulator YhaJ Escherichia coli O157:H7
P76369 3.47e-09 60 26 6 254 3 yeeY Uncharacterized HTH-type transcriptional regulator YeeY Escherichia coli (strain K12)
Q8KA72 1.79e-08 58 29 2 139 3 metR HTH-type transcriptional regulator MetR Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
Q85G62 2.22e-08 57 24 8 285 3 rbcR Probable RuBisCO transcriptional regulator Cyanidioschyzon merolae (strain NIES-3377 / 10D)
P0A2Q4 2.84e-07 54 36 1 88 3 metR HTH-type transcriptional regulator MetR Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P0A2Q5 2.84e-07 54 36 1 88 3 metR HTH-type transcriptional regulator MetR Salmonella typhi
P0A9G1 8.93e-07 53 35 1 88 3 metR HTH-type transcriptional regulator MetR Shigella flexneri
P0A9F9 8.93e-07 53 35 1 88 1 metR HTH-type transcriptional regulator MetR Escherichia coli (strain K12)
P0A9G0 8.93e-07 53 35 1 88 3 metR HTH-type transcriptional regulator MetR Escherichia coli O157:H7
P0ACR2 9.03e-07 52 21 6 248 3 ydhB Uncharacterized HTH-type transcriptional regulator YdhB Escherichia coli (strain K12)
P0ACR3 9.03e-07 52 21 6 248 3 ydhB Uncharacterized HTH-type transcriptional regulator YdhB Escherichia coli O157:H7
Q765S2 9.49e-07 52 21 7 242 3 allS HTH-type transcriptional activator AllS Klebsiella pneumoniae
Q8FK66 2.04e-06 52 25 11 263 3 allS HTH-type transcriptional activator AllS Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
Q0TKD7 2.04e-06 52 25 11 263 3 allS HTH-type transcriptional activator AllS Escherichia coli O6:K15:H31 (strain 536 / UPEC)
A2CI69 2.12e-06 52 40 0 64 3 rbcR Probable RuBisCO transcriptional regulator Chlorokybus atmophyticus
P55576 2.36e-06 51 25 1 124 3 NGR_a02420 Uncharacterized HTH-type transcriptional regulator y4mQ Sinorhizobium fredii (strain NBRC 101917 / NGR234)
Q1RF30 2.64e-06 51 25 11 263 3 allS HTH-type transcriptional activator AllS Escherichia coli (strain UTI89 / UPEC)
A1A8H0 2.64e-06 51 25 11 263 3 allS HTH-type transcriptional activator AllS Escherichia coli O1:K1 / APEC
P33634 3.02e-06 51 37 0 81 3 yfiE Uncharacterized HTH-type transcriptional regulator YfiE Escherichia coli (strain K12)
P0ACR0 3.51e-06 51 24 11 263 1 allS HTH-type transcriptional activator AllS Escherichia coli (strain K12)
P0ACR1 3.51e-06 51 24 11 263 3 allS HTH-type transcriptional activator AllS Escherichia coli O157:H7
Q6B936 1.03e-05 49 43 0 64 3 rbcR Probable RuBisCO transcriptional regulator Gracilaria tenuistipitata var. liui
O78432 1.07e-05 49 40 0 70 3 rbcR Probable RuBisCO transcriptional regulator Guillardia theta
P55181 1.29e-05 49 23 11 262 3 yxjO Uncharacterized HTH-type transcriptional regulator YxjO Bacillus subtilis (strain 168)
Q8YQ82 1.52e-05 49 40 1 77 3 rbcR Probable RuBisCO transcriptional regulator Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576)
Q8X4M5 1.59e-05 49 21 4 182 3 cynR HTH-type transcriptional regulator CynR Escherichia coli O157:H7
P48271 1.8e-05 48 25 8 256 3 rbcR Probable RuBisCO transcriptional regulator Cyanophora paradoxa
Q3MCB5 2.32e-05 48 40 1 77 3 rbcR Probable RuBisCO transcriptional regulator Trichormus variabilis (strain ATCC 29413 / PCC 7937)
P27111 2.6e-05 48 21 4 182 1 cynR HTH-type transcriptional regulator CynR Escherichia coli (strain K12)
P73123 2.74e-05 48 35 0 70 3 rbcR Probable RuBisCO transcriptional regulator Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
P30864 3.33e-05 48 23 9 265 3 yafC Uncharacterized HTH-type transcriptional regulator YafC Escherichia coli (strain K12)
Q57083 3.83e-05 48 27 2 118 1 perR HTH-type transcriptional regulator PerR Escherichia coli (strain K12)
Q8VWE6 4.06e-05 47 28 5 176 3 lrhA Probable HTH-type transcriptional regulator LrhA Escherichia coli O157:H7
P36771 5e-05 47 28 5 176 1 lrhA Probable HTH-type transcriptional regulator LrhA Escherichia coli (strain K12)
Q47141 5.85e-05 47 34 0 75 1 hcaR Hca operon transcriptional activator HcaR Escherichia coli (strain K12)
Q47005 6.61e-05 47 25 7 230 3 nac Nitrogen assimilation regulatory protein nac Escherichia coli (strain K12)
O19892 6.66e-05 47 23 7 273 3 rbcR Probable RuBisCO transcriptional regulator Cyanidium caldarium
P52676 0.00014 46 27 3 129 3 nmcR Carbapenem-hydrolyzing beta-lactamase transcriptional activator Enterobacter cloacae
B4SYF7 0.000177 45 27 5 134 3 hdfR HTH-type transcriptional regulator HdfR Salmonella newport (strain SL254)
B4TNR5 0.000179 45 27 5 134 3 hdfR HTH-type transcriptional regulator HdfR Salmonella schwarzengrund (strain CVM19633)
B5FN59 0.000184 45 27 5 134 3 hdfR HTH-type transcriptional regulator HdfR Salmonella dublin (strain CT_02021853)
O07906 0.000187 45 22 6 249 3 yraN Uncharacterized HTH-type transcriptional regulator YraN Bacillus subtilis (strain 168)
P0A2Q0 0.000189 45 27 5 134 3 hdfR HTH-type transcriptional regulator HdfR Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P0A2Q1 0.000189 45 27 5 134 3 hdfR HTH-type transcriptional regulator HdfR Salmonella typhi
B5BIR0 0.000189 45 27 5 134 3 hdfR HTH-type transcriptional regulator HdfR Salmonella paratyphi A (strain AKU_12601)
C0Q2U0 0.000189 45 27 5 134 3 hdfR HTH-type transcriptional regulator HdfR Salmonella paratyphi C (strain RKS4594)
A9MXD5 0.000189 45 27 5 134 3 hdfR HTH-type transcriptional regulator HdfR Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7)
Q5PJZ0 0.000189 45 27 5 134 3 hdfR HTH-type transcriptional regulator HdfR Salmonella paratyphi A (strain ATCC 9150 / SARB42)
B4TAZ8 0.000189 45 27 5 134 3 hdfR HTH-type transcriptional regulator HdfR Salmonella heidelberg (strain SL476)
B5EZ22 0.000189 45 27 5 134 3 hdfR HTH-type transcriptional regulator HdfR Salmonella agona (strain SL483)
P52662 0.000222 45 37 0 69 3 pecT HTH-type transcriptional regulator PecT Dickeya dadantii (strain 3937)
Q1XDT2 0.000359 45 39 0 64 3 rbcR Probable RuBisCO transcriptional regulator Neopyropia yezoensis
P51205 0.000383 45 39 0 64 3 rbcR Probable RuBisCO transcriptional regulator Porphyra purpurea
P71318 0.000638 44 22 10 287 3 oxyR Hydrogen peroxide-inducible genes activator Pectobacterium carotovorum subsp. carotovorum
Q08597 0.000661 44 23 4 171 3 nac Nitrogen assimilation regulatory protein nac Klebsiella aerogenes
Q44311 0.000665 44 23 6 228 3 soxR HTH-type transcriptional regulator SoxR Arthrobacter sp. (strain TE1826)
O34685 0.000693 43 23 12 288 1 yofA HTH-type transcriptional regulator YofA Bacillus subtilis (strain 168)
P45099 0.000729 43 27 5 161 3 gcvA Glycine cleavage system transcriptional activator homolog Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q9S4Y7 0.000899 43 22 9 254 3 allS HTH-type transcriptional activator AllS Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q5PCH2 0.000899 43 22 9 254 3 allS HTH-type transcriptional activator AllS Salmonella paratyphi A (strain ATCC 9150 / SARB42)
P77171 0.001 43 28 9 195 3 ydcI Uncharacterized HTH-type transcriptional regulator YdcI Escherichia coli (strain K12)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS16675
Feature type CDS
Gene -
Product LysR family transcriptional regulator
Location 3675999 - 3676862 (strand: -1)
Length 864 (nucleotides) / 287 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_214
Orthogroup size 9
N. genomes 7

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Genomic region

Domains

PF00126 Bacterial regulatory helix-turn-helix protein, lysR family
PF03466 LysR substrate binding domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0583 Transcription (K) K DNA-binding transcriptional regulator, LysR family

Protein Sequence

MEKSRTTLDQWITLQAVVDYGGFAQAADVLHRTQSSISYTINKLEQTLGIEILSLEKRRAVLTTEGELLLTLSREVTEKALSLEKKAKNIKFNNKLKINVLIDPMYVADPFLNKISQFIKQNKQYDINIYRNSLSKSEILVQKEYDLIVSPYYIKSLQPIVLESITTTLVSHPDSPLQKLQDEELLQELQKHSCISLSPDSPDTDNQAQVIQVGSVETAISLIQHGLGYARLPLIFIQDELNKKTIKQLITHKKEKEYKFYLYLNKNSFINENLQSLLSTISYSTNI

Flanking regions ( +/- flanking 50bp)

GCTTCGTTTAAAATGCATTATTAATAAACAATAATAAGAAGGACTCCATTATGGAAAAATCCCGCACAACATTAGACCAATGGATCACCTTACAAGCTGTTGTTGATTACGGTGGCTTTGCTCAAGCCGCTGATGTGTTACATAGGACTCAATCATCAATTAGCTATACTATCAATAAGTTAGAACAAACCTTGGGTATAGAAATACTTTCTTTAGAAAAAAGACGCGCAGTATTAACTACTGAGGGAGAACTATTGCTAACACTTTCTCGAGAAGTGACAGAAAAGGCATTATCTCTAGAAAAAAAGGCAAAAAATATCAAATTTAACAATAAGTTAAAAATTAACGTACTAATTGACCCAATGTATGTCGCTGATCCTTTTTTGAACAAAATATCACAATTTATTAAGCAGAATAAACAGTATGATATTAATATTTATAGGAATTCTCTCAGCAAATCAGAAATTTTAGTGCAAAAAGAATATGATTTAATTGTGTCACCTTATTATATTAAATCACTGCAACCTATTGTTTTAGAAAGCATTACAACTACCTTAGTATCACATCCAGATAGCCCATTACAGAAACTACAAGATGAGGAATTATTGCAGGAATTACAAAAACATAGCTGTATTTCTCTTTCTCCTGATTCACCCGATACTGATAATCAGGCCCAAGTCATTCAAGTTGGCTCGGTAGAGACAGCAATTAGCTTAATTCAGCATGGTTTAGGTTATGCACGTCTCCCCCTTATTTTTATTCAAGATGAATTGAATAAAAAAACAATAAAACAATTAATAACGCATAAAAAAGAGAAGGAATATAAATTCTATTTATATTTGAATAAAAATTCATTTATTAATGAAAACTTGCAAAGTTTATTATCAACAATTAGCTATTCAACAAATATCTAAAAACTTTTAATAAAAAATCATTTTAATTAAATTACGACATATTAAATAAT