Homologs in group_1756

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_12230 FBDBKF_12230 71.6 Morganella morganii S1 priA primosomal protein N'
EHELCC_14075 EHELCC_14075 71.6 Morganella morganii S2 priA primosomal protein N'
NLDBIP_15170 NLDBIP_15170 71.6 Morganella morganii S4 priA primosomal protein N'
LHKJJB_15440 LHKJJB_15440 71.6 Morganella morganii S3 priA primosomal protein N'
HKOGLL_14560 HKOGLL_14560 71.6 Morganella morganii S5 priA primosomal protein N'
F4V73_RS17060 F4V73_RS17060 71.6 Morganella psychrotolerans priA primosomal protein N'

Distribution of the homologs in the orthogroup group_1756

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1756

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P17888 0.0 1031 65 1 732 1 priA Primosomal protein N' Escherichia coli (strain K12)
P44647 0.0 751 53 10 738 3 priA Primosomal protein N' Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P57220 8.7e-127 397 31 10 734 3 priA Primosomal protein N' Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS)
O84783 1.08e-126 397 35 21 759 3 priA Primosomal protein N' Chlamydia trachomatis serovar D (strain ATCC VR-885 / DSM 19411 / UW-3/Cx)
P94461 1.07e-124 394 36 6 578 3 priA Primosomal protein N' Bacillus subtilis (strain 168)
Q9PLE5 7.64e-124 390 34 19 755 3 priA Primosomal protein N' Chlamydia muridarum (strain MoPn / Nigg)
Q9Z6Y2 1.91e-120 381 34 17 749 3 priA Primosomal protein N' Chlamydia pneumoniae
Q8KA15 1.05e-117 373 28 11 738 3 priA Primosomal protein N' Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
P74397 2.27e-114 367 33 22 803 3 priA Primosomal protein N' Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
Q1RI08 2.24e-113 359 38 8 525 3 priA Primosomal protein N' Rickettsia bellii (strain RML369-C)
Q1RI08 1.44e-05 52 33 3 103 3 priA Primosomal protein N' Rickettsia bellii (strain RML369-C)
Q4UL64 3.25e-112 357 36 7 525 3 priA Primosomal protein N' Rickettsia felis (strain ATCC VR-1525 / URRWXCal2)
Q4UL64 4.06e-05 50 31 3 103 3 priA Primosomal protein N' Rickettsia felis (strain ATCC VR-1525 / URRWXCal2)
O83258 3.62e-112 357 37 6 538 3 priA Primosomal protein N' Treponema pallidum (strain Nichols)
Q92HH1 1.39e-110 352 36 7 525 3 priA Primosomal protein N' Rickettsia conorii (strain ATCC VR-613 / Malish 7)
Q92HH1 0.000141 48 32 3 103 3 priA Primosomal protein N' Rickettsia conorii (strain ATCC VR-613 / Malish 7)
Q9ZD10 4.05e-107 343 35 7 556 3 priA Primosomal protein N' Rickettsia prowazekii (strain Madrid E)
Q68WJ4 5.27e-107 343 36 7 525 3 priA Primosomal protein N' Rickettsia typhi (strain ATCC VR-144 / Wilmington)
Q45032 2.04e-90 300 30 7 521 3 priA Primosomal protein N' Borreliella burgdorferi (strain ATCC 35210 / DSM 4680 / CIP 102532 / B31)
O25149 2.98e-78 266 33 11 515 3 priA Primosomal protein N' Helicobacter pylori (strain ATCC 700392 / 26695)
Q9ZKE4 2.24e-77 263 33 11 512 3 priA Primosomal protein N' Helicobacter pylori (strain J99 / ATCC 700824)
Q9WY22 1.04e-73 256 29 6 475 3 priA Primosomal protein N' Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8)
P05445 1.69e-57 213 38 4 328 3 priA Primosomal protein N' Rhodospirillum rubrum
P05445 6.83e-52 196 35 8 408 3 priA Primosomal protein N' Rhodospirillum rubrum
P9WMQ9 1.16e-16 87 25 11 378 1 priA Probable primosomal protein N' Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P0A5A6 1.16e-16 87 25 11 378 3 priA Probable primosomal protein N' Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)
P9WMQ8 9.27e-15 81 25 12 377 3 priA Probable primosomal protein N' Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
Q9CCQ3 2.65e-14 80 24 10 408 3 priA Probable primosomal protein N' Mycobacterium leprae (strain TN)
P57381 8.98e-10 65 30 8 213 3 mfd Transcription-repair-coupling factor Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS)
F4JFJ3 1.17e-08 62 29 8 217 2 At3g02060 ATP-dependent DNA helicase At3g02060, chloroplastic Arabidopsis thaliana
Q9ZJ57 1.53e-08 62 27 2 172 3 mfd Transcription-repair-coupling factor Helicobacter pylori (strain J99 / ATCC 700824)
O52236 1.62e-08 62 27 11 264 3 mfd Transcription-repair-coupling factor Myxococcus xanthus
P30958 2.06e-08 61 29 7 190 1 mfd Transcription-repair-coupling factor Escherichia coli (strain K12)
Q55750 2.6e-08 61 23 17 437 3 mfd Transcription-repair-coupling factor Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
O26066 9.86e-08 59 26 2 169 3 mfd Transcription-repair-coupling factor Helicobacter pylori (strain ATCC 700392 / 26695)
P45128 1.45e-07 58 30 8 200 3 mfd Transcription-repair-coupling factor Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q89AK2 2.38e-07 58 26 9 250 3 mfd Transcription-repair-coupling factor Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp)
P39145 1.51e-06 55 24 5 233 2 comFA ComF operon protein 1 Bacillus subtilis (strain 168)
Q54900 1.53e-06 55 30 3 150 3 recG ATP-dependent DNA helicase RecG Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4)
O51568 1.91e-06 55 34 3 119 3 mfd Transcription-repair-coupling factor Borreliella burgdorferi (strain ATCC 35210 / DSM 4680 / CIP 102532 / B31)
O67837 3.92e-06 54 28 3 140 3 recG ATP-dependent DNA helicase RecG Aquifex aeolicus (strain VF5)
Q55681 8.39e-06 53 27 4 170 3 recG ATP-dependent DNA helicase RecG Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
Q4L3G0 0.000145 49 28 7 170 3 mfd Transcription-repair-coupling factor Staphylococcus haemolyticus (strain JCSC1435)
P37474 0.000146 49 26 8 213 3 mfd Transcription-repair-coupling factor Bacillus subtilis (strain 168)
A4RK80 0.000229 48 27 2 112 3 PRP28 Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 Pyricularia oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958)
Q8CMT1 0.000284 48 28 7 173 3 mfd Transcription-repair-coupling factor Staphylococcus epidermidis (strain ATCC 12228 / FDA PCI 1200)
Q5HRQ2 0.000288 48 28 7 173 3 mfd Transcription-repair-coupling factor Staphylococcus epidermidis (strain ATCC 35984 / DSM 28319 / BCRC 17069 / CCUG 31568 / BM 3577 / RP62A)
Q49V12 0.000879 46 28 7 170 3 mfd Transcription-repair-coupling factor Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229 / NCIMB 8711 / NCTC 7292 / S-41)
Q6FM43 0.001 46 30 5 125 3 PRP28 Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 Candida glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC 0622 / NRRL Y-65 / CBS 138)
Q6GJG8 0.001 46 28 7 170 3 mfd Transcription-repair-coupling factor Staphylococcus aureus (strain MRSA252)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS15920
Feature type CDS
Gene priA
Product primosomal protein N'
Location 3533192 - 3535393 (strand: -1)
Length 2202 (nucleotides) / 733 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_1756
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF00270 DEAD/DEAH box helicase
PF00271 Helicase conserved C-terminal domain
PF17764 3'DNA-binding domain (3'BD)
PF18074 Primosomal protein N C-terminal domain
PF21213 Primosomal protein N'-like, winged helix

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1198 Replication, recombination and repair (L) L Primosomal protein N' (replication factor Y) - superfamily II helicase

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K04066 primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] Homologous recombination -

Protein Sequence

MTIVQVILPVPLFSSFDYLLPEGCAMPTIGCRVVVPFGKQRRSIGIVKGFSSHSEFPIEKLKPIEEVLDTETLFPGILWDMLNWASAYYHYPLGEVLFHAMPILLRQGKPAEFTPLWQWYATQEGEALDLNSLKSAKKQQQALAALRRAPLYRHQLDEYEITTATLNNLKKKALADLRPIQPAPIQWQSTFAVQGERFKLNAEQAVAVGAITAQADQFSPWLLLGITGSGKTEVYLSVLETILAQGKQALILVPEIGLTPQTIRRFKARFNAPVDVLHSGLNDTERLAVWLRAKRGDNAIIIGTRSALLTPFQQLGIIIIDEEHDGSYKQQDGWRYHARDLAVFRAKQENIPIVMGTATPSIETSYNVAQKKYQQLTLTQRAGNAKPATEHLIDLKGQPLTTGLSPTLIKAIKEHLNAGNQVMLFLNRRGFAPALLCHECGWIAECPRCDHYYTLHQKHGMLRCHQCDSQRRIPSQCPQCGSTNLMPVGLGTEQLEQGIGELFPNTPITRIDKDTTSRKGALEQQLEDIYQGGSRILIGTQMLAKGHHFPDVTLVALLDVDGALFSSDFRAAERFAQLYTQVSGRAGRAGKQGAVYLQTHQPDHPLLLTLLEKGYDAFTKEALQERQATFLPPYSSHIMIRSEDHNNQKAPQFLRQLKQFFEQHPMRDSHLWVMGPIPAIQAKRGGNFRWQLLLQHPSRGYLQKLMSVTYPQIVALPESKKVKWNIDVDPTDC

Flanking regions ( +/- flanking 50bp)

TGTGATATTCTTAATACTATCTTTTCGCTAAAACACTCGGAAACCCTGATATGACTATAGTTCAGGTAATATTACCTGTACCACTGTTTTCTTCCTTTGACTACCTGCTTCCAGAAGGTTGTGCCATGCCAACAATAGGTTGTCGCGTGGTCGTTCCCTTTGGCAAACAGCGTCGCTCTATCGGTATTGTTAAAGGTTTTAGTTCACACAGTGAGTTTCCCATTGAAAAACTGAAACCTATTGAAGAAGTACTTGATACAGAGACTCTGTTTCCGGGGATCTTATGGGATATGCTTAATTGGGCAAGTGCTTATTATCATTATCCTTTAGGTGAAGTTCTCTTTCATGCGATGCCAATTCTACTACGACAAGGGAAACCGGCTGAATTTACGCCCTTATGGCAATGGTATGCCACTCAAGAGGGAGAAGCGCTTGATCTTAACAGTCTAAAAAGCGCTAAAAAGCAACAACAAGCTTTGGCGGCACTACGCCGTGCCCCTTTGTATCGCCACCAGTTAGATGAATATGAAATTACAACAGCGACACTAAATAACTTAAAAAAGAAAGCATTAGCGGATTTACGTCCTATTCAACCCGCCCCTATACAGTGGCAAAGCACTTTTGCCGTACAAGGCGAACGATTTAAACTTAATGCCGAACAGGCGGTTGCTGTTGGTGCTATCACGGCACAAGCAGACCAATTTTCGCCTTGGTTATTATTGGGGATCACAGGCTCTGGTAAAACAGAAGTGTATCTCAGTGTACTTGAAACTATTCTCGCTCAAGGTAAACAAGCACTGATCTTAGTCCCTGAAATAGGTTTGACCCCACAAACCATTCGCCGTTTTAAAGCACGTTTTAATGCCCCCGTCGATGTTCTTCACTCCGGACTCAACGATACGGAACGCCTTGCGGTATGGCTACGAGCGAAACGGGGAGATAATGCCATTATTATCGGTACGCGCTCGGCATTGCTCACCCCTTTTCAGCAATTAGGGATTATTATTATTGATGAAGAGCATGATGGCTCTTATAAGCAACAAGATGGCTGGCGTTACCATGCACGGGATTTAGCGGTCTTTCGCGCCAAGCAAGAAAATATTCCTATCGTGATGGGCACTGCCACCCCATCGATTGAAACCAGCTATAACGTTGCACAAAAAAAATATCAACAACTGACGTTAACGCAACGGGCGGGAAATGCTAAACCTGCCACAGAGCATTTAATCGACCTAAAAGGGCAACCGCTCACAACCGGACTCTCTCCAACACTCATTAAAGCCATAAAAGAGCATCTTAATGCCGGTAACCAAGTGATGTTGTTTTTAAATCGCCGTGGCTTTGCGCCTGCGTTACTCTGCCATGAGTGTGGTTGGATTGCCGAATGCCCTCGCTGTGATCACTATTATACCTTACATCAAAAACACGGCATGCTACGTTGCCACCAGTGTGATAGCCAACGTCGTATTCCATCACAATGCCCTCAATGTGGTTCAACTAATTTAATGCCAGTAGGATTGGGCACAGAACAACTTGAACAAGGCATTGGCGAGTTATTTCCTAATACCCCGATCACCCGTATTGATAAAGATACCACCAGTCGTAAAGGAGCATTAGAGCAACAACTAGAAGACATCTATCAAGGTGGATCACGTATTCTAATTGGCACACAGATGTTGGCTAAAGGTCACCACTTCCCAGACGTTACGCTGGTGGCGCTACTTGATGTTGATGGTGCTTTATTTTCTAGTGACTTTCGTGCTGCTGAACGTTTTGCTCAGCTTTATACTCAAGTATCAGGTCGTGCAGGAAGAGCTGGGAAACAAGGTGCCGTCTATTTACAAACTCACCAACCCGATCACCCGCTATTATTAACGCTGTTAGAAAAAGGCTATGATGCTTTTACTAAAGAGGCGTTACAAGAGCGACAAGCAACCTTTTTACCCCCTTATTCCAGCCATATTATGATCCGCTCTGAAGATCATAATAACCAAAAAGCCCCCCAGTTTTTACGCCAGCTTAAACAGTTCTTCGAGCAACATCCGATGAGAGATAGTCATTTATGGGTGATGGGCCCCATTCCGGCCATTCAGGCAAAACGAGGAGGAAATTTCCGTTGGCAACTATTATTGCAACATCCTTCAAGGGGTTATTTACAAAAGTTAATGTCTGTTACTTATCCTCAGATAGTGGCGCTTCCTGAGAGTAAAAAAGTGAAATGGAATATTGATGTTGATCCAACTGATTGCTAAGCCTACTGATATTTAGCGCGCTTATAATTCAAAACTATTTATCAATTTTG