Homologs in group_2168

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_16305 FBDBKF_16305 70.9 Morganella morganii S1 rfaC lipopolysaccharide heptosyltransferase RfaC
EHELCC_16340 EHELCC_16340 70.9 Morganella morganii S2 rfaC lipopolysaccharide heptosyltransferase RfaC
NLDBIP_17000 NLDBIP_17000 70.9 Morganella morganii S4 rfaC lipopolysaccharide heptosyltransferase RfaC
LHKJJB_16920 LHKJJB_16920 70.9 Morganella morganii S3 rfaC lipopolysaccharide heptosyltransferase RfaC
HKOGLL_16920 HKOGLL_16920 70.9 Morganella morganii S5 rfaC lipopolysaccharide heptosyltransferase RfaC
F4V73_RS17285 F4V73_RS17285 70.9 Morganella psychrotolerans rfaC lipopolysaccharide heptosyltransferase RfaC

Distribution of the homologs in the orthogroup group_2168

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2168

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0DX54 3.74e-161 455 70 1 315 1 waaC Lipopolysaccharide heptosyltransferase 1 Escherichia coli O18:K1:H7 (strain RS218 / NMEC)
P24173 2.76e-159 450 69 0 316 1 waaC Lipopolysaccharide heptosyltransferase 1 Escherichia coli (strain K12)
P26469 3.54e-159 450 70 0 312 3 waaC Lipopolysaccharide heptosyltransferase 1 Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q9HUF5 2.36e-110 327 56 1 293 3 waaC Lipopolysaccharide heptosyltransferase 1 Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
O87333 9.13e-23 100 24 10 330 3 waaC Lipopolysaccharide heptosyltransferase 1 Campylobacter coli
Q7VNA4 1.79e-10 64 25 15 314 3 waaF Lipooligosaccharide heptosyltransferase 2 Haemophilus ducreyi (strain 35000HP / ATCC 700724)
P37421 3.92e-10 63 21 7 328 3 waaF Lipopolysaccharide heptosyltransferase 2 Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P37692 4.42e-09 60 22 10 332 1 waaF Lipopolysaccharide heptosyltransferase 2 Escherichia coli (strain K12)
P45042 2.29e-07 55 29 3 117 3 waaF Lipooligosaccharide heptosyltransferase 2 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q57336 1.09e-05 50 21 7 294 3 opsX Lipopolysaccharide core heptosyltransferase OpsX Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS15695
Feature type CDS
Gene rfaC
Product lipopolysaccharide heptosyltransferase RfaC
Location 3486674 - 3487636 (strand: -1)
Length 963 (nucleotides) / 320 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_2168
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF01075 Glycosyltransferase family 9 (heptosyltransferase)

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0859 Cell wall/membrane/envelope biogenesis (M) M ADP-heptose:LPS heptosyltransferase

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K02841 lipopolysaccharide heptosyltransferase I [EC:2.4.99.23] Lipopolysaccharide biosynthesis
Metabolic pathways		 -

Protein Sequence

MKRVLIVKTSSMGDVLHTLPALTDARAAYPEICFDWAVEEGFAQIPSWHPAVDTVIPVAIRRWRKNWFSAPIRAERAQFRHAIQAHHYDAVIDAQGLLKSAFLVTRYAKGTKHGYSRHSAREPLASFFYDIRHNVSKKMHAVERIRQLFALSLNYPLPTTQGDYGIAQHFLSLPAIDKRPYLVFLHATTRDEKHWPETHWRELIALLANSGLRIKLPWGAEHEHQRAIRLAQGFDYVDVLPKMSLAEVAQVIAGAQSVVSVDTGLSHLTAALDKPNITLFGPTDPGLIGGYGKAQRSLKAAGGDIGEIQALDVLKSFTHV

Flanking regions ( +/- flanking 50bp)

GAACAAGTCTTTAGCGAACTCGAGCAATTACTCGCTACGGAGCCATCGCTATGAAGCGGGTACTGATTGTTAAAACCTCTTCCATGGGGGATGTACTGCATACCCTACCGGCATTAACTGATGCAAGAGCAGCATATCCTGAGATCTGTTTTGATTGGGCCGTTGAAGAAGGTTTTGCGCAAATTCCAAGCTGGCACCCAGCTGTTGATACCGTTATTCCTGTCGCAATACGCCGTTGGCGTAAAAACTGGTTTAGTGCGCCTATTCGCGCTGAACGTGCACAATTTCGTCACGCGATACAAGCACATCATTATGATGCGGTGATTGATGCCCAAGGTTTACTAAAAAGCGCTTTTTTAGTTACACGCTATGCGAAAGGCACTAAACACGGCTATTCTCGTCACAGTGCTAGAGAGCCTTTAGCGAGTTTTTTCTATGATATTCGCCACAATGTCAGTAAAAAAATGCATGCGGTAGAGCGTATCCGCCAGCTATTTGCCCTTAGCCTTAATTACCCACTTCCCACCACTCAAGGGGACTATGGTATAGCACAGCATTTTCTCTCATTACCCGCTATTGATAAACGCCCTTATTTAGTCTTCTTACACGCCACTACCCGTGATGAGAAACATTGGCCCGAGACCCATTGGCGAGAGTTAATTGCATTACTGGCGAATTCAGGTTTACGTATCAAACTACCTTGGGGCGCAGAGCATGAACATCAGCGTGCAATACGCCTTGCTCAAGGTTTTGACTATGTTGATGTATTACCCAAAATGTCACTCGCAGAAGTGGCTCAAGTGATTGCCGGAGCGCAAAGTGTCGTTTCTGTCGATACCGGATTAAGCCATTTAACCGCAGCCTTAGATAAGCCGAATATTACCCTCTTTGGCCCTACCGATCCGGGATTAATCGGCGGTTATGGTAAGGCACAAAGGTCGTTAAAAGCAGCAGGTGGGGATATTGGTGAGATTCAGGCACTAGATGTGCTAAAATCTTTCACTCATGTGTAAAAAGAAAATATATTTTTACTTGTGCAACTATTACCTATTTTTTAGTATAT