Orthogroup:group_2168


Homologs in group_2168

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_16005 FBDBKF_16005 Morganella morganii S1 dnaX DNA polymerase III subunit gamma/tau
EHELCC_18610 EHELCC_18610 Morganella morganii S2 dnaX DNA polymerase III subunit gamma/tau
NLDBIP_17440 NLDBIP_17440 Morganella morganii S4 dnaX DNA polymerase III subunit gamma/tau
LHKJJB_17220 LHKJJB_17220 Morganella morganii S3 dnaX DNA polymerase III subunit gamma/tau
HKOGLL_17175 HKOGLL_17175 Morganella morganii S5 dnaX DNA polymerase III subunit gamma/tau
F4V73_RS16305 F4V73_RS16305 Morganella psychrotolerans dnaX DNA polymerase III subunit gamma/tau
PMI_RS00670 PMI_RS00670 Proteus mirabilis HI4320 dnaX DNA polymerase III subunit gamma/tau

Distribution of group_2168 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_2168 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_2168

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_2168.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 dnaX 7

Product

# Product Occurence
1 DNA polymerase III subunit gamma/tau 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG2812 7 L Replication, recombination and repair (L) DNA polymerase III, gamma/tau subunits

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K02343 7 DNA polymerase III subunit gamma/tau [EC:2.7.7.7] DNA replication
Mismatch repair
Homologous recombination		 -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF12168 7 DNA polymerase III subunits tau domain IV DnaB-binding
PF12169 7 DNA polymerase III subunits gamma and tau domain III
PF12170 7 DNA polymerase III tau subunit V interacting with alpha
PF13177 7 DNA polymerase III, delta subunit
PF22608 7 DNA polymerase III clamp loader subunit, ATPase lid domain

Annotations of the 132 SwissProt hits

Annotation Number of occurrences
ATPase WRNIP1 1
ATPase WRNIP1 homolog C26H5.02c 1
DNA polymerase III subunit delta' 8
DNA polymerase III subunit gamma 3
DNA polymerase III subunit gamma/tau 6
DNA polymerase III subunit tau 2
DNA polymerase III subunit tau/gamma 1
DNA-dependent ATPase MGS1 1
Holliday junction branch migration complex subunit RuvB 3
Probable replication factor C subunit 2 1
Probable replication factor C subunit 3 1
Probable replication factor C subunit 4 1
Probable replication factor C subunit 5 1
Protein STICHEL 1
Protein STICHEL-like 1 1
Protein STICHEL-like 2 1
Protein STICHEL-like 3 1
Protein STICHEL-like 4 1
Putative replication factor C small subunit L499 1
Putative replication factor C small subunit R395 1
Replication factor C large subunit 13
Replication factor C small subunit 37
Replication factor C small subunit 1 3
Replication factor C small subunit 2 3
Replication factor C subunit 1 2
Replication factor C subunit 2 11
Replication factor C subunit 3 6
Replication factor C subunit 4 8
Replication factor C subunit 5 4
Replication-associated recombination protein A 4
Uncharacterized AAA domain-containing protein MT2636 1
Uncharacterized AAA domain-containing protein Rv2559c 1
Uncharacterized protein MG007 1
Uncharacterized protein MG007 homolog 1

Protein length

Min length 643
Max length 658
Mean length (sd) 645.7 (5.6)
Median length 643.0

Protein length distribution