Homologs in group_2188

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_16210 FBDBKF_16210 78.7 Morganella morganii S1 yicC Uncharacterized stationary-phase protein YicC, UPF0701 family
EHELCC_16245 EHELCC_16245 78.7 Morganella morganii S2 yicC Uncharacterized stationary-phase protein YicC, UPF0701 family
NLDBIP_17095 NLDBIP_17095 78.7 Morganella morganii S4 yicC Uncharacterized stationary-phase protein YicC, UPF0701 family
LHKJJB_17015 LHKJJB_17015 78.7 Morganella morganii S3 yicC Uncharacterized stationary-phase protein YicC, UPF0701 family
HKOGLL_16825 HKOGLL_16825 78.7 Morganella morganii S5 yicC Uncharacterized stationary-phase protein YicC, UPF0701 family
F4V73_RS17390 F4V73_RS17390 78.7 Morganella psychrotolerans - YicC/YloC family endoribonuclease

Distribution of the homologs in the orthogroup group_2188

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2188

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q7CPH3 2.22e-162 455 79 0 287 3 yicC Probable endoribonuclease YicC Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P23839 1e-160 451 78 0 287 1 yicC Endoribonuclease YicC Escherichia coli (strain K12)
P44726 1.02e-128 370 62 0 287 1 HI_0467 Probable endoribonuclease YicC Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q182S9 2.53e-40 144 31 5 295 1 CD630_25890 Probable endoribonuclease YicC Clostridioides difficile (strain 630)
O34441 4.02e-35 131 30 4 292 1 yloC Endoribonuclease YloC Bacillus subtilis (strain 168)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS15575
Feature type CDS
Gene -
Product YicC/YloC family endoribonuclease
Location 3463905 - 3464768 (strand: -1)
Length 864 (nucleotides) / 287 (amino acids)
In genomic island GI63

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_2188
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF03755 Endoribonuclease YicC-like, N-terminal region
PF08340 Endoribonuclease YicC-like, C-terminal

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1561 Function unknown (S) S Uncharacterized stationary-phase protein YicC, UPF0701 family

Protein Sequence

MIRSMTAFARRDIKKEWGSAAWELRSVNQRYLETYIRLPEQLRSLEPVIRERLRNRLTRGKIECNLRFELNAHSQGELTLDENLARQLIVSANWVKSQSHEGTISPFDILRWPGVISAQEQDLDAIGSELLAELDVAIDAFIASREAEGQALKTLIEQRLDAVSAEVVKVRAQMPEILQWQRERLTSKLEEAQVQVDNNRLEQELVMLAQRLDVAEELDRLDAHVKETRKILSKKEAVGRRLDFMMQEFNRESNTLASKSINTDVTNSAIELKVLIEQMREQIQNIE

Flanking regions ( +/- flanking 50bp)

GATACCTAGGGTTATAATCGTTACATCATTTACAATATTGAGACCCTATTATGATCCGTAGTATGACCGCTTTCGCTCGTCGAGATATCAAAAAAGAGTGGGGTAGCGCCGCATGGGAACTGCGTTCCGTTAATCAACGTTACCTTGAAACATATATCCGTTTACCTGAGCAATTACGTAGTTTAGAGCCTGTTATTCGTGAACGTCTACGTAATCGCTTAACACGCGGTAAAATAGAATGTAACTTGCGTTTTGAACTCAATGCTCACTCACAAGGTGAACTGACTTTGGATGAAAATTTAGCAAGGCAACTGATTGTTTCTGCTAACTGGGTAAAAAGCCAAAGTCATGAAGGTACTATCAGCCCATTTGATATTTTACGTTGGCCTGGGGTTATCTCAGCCCAAGAGCAAGATTTAGATGCCATTGGTAGCGAACTATTAGCAGAGCTTGATGTAGCTATCGATGCCTTTATTGCAAGTCGAGAAGCTGAAGGCCAAGCACTCAAAACGCTGATTGAGCAACGTTTAGATGCCGTAAGTGCTGAGGTCGTAAAAGTAAGAGCACAGATGCCAGAAATTCTCCAATGGCAACGTGAGCGCTTAACCAGCAAATTAGAAGAAGCACAAGTTCAAGTTGATAATAATCGTTTAGAGCAAGAATTAGTGATGTTAGCGCAACGCTTAGATGTCGCTGAAGAGCTTGATAGATTAGATGCCCACGTTAAAGAAACACGCAAAATTCTCAGTAAAAAAGAGGCTGTCGGCCGTCGCCTTGATTTTATGATGCAGGAGTTTAACCGTGAATCCAATACACTAGCATCCAAATCAATTAATACGGATGTCACCAATTCCGCTATTGAATTAAAAGTATTAATTGAACAGATGCGAGAGCAGATCCAGAATATTGAGTAACATTCTACAAGACACTAGAAGAACTCAAAATTACTGCTTATAAAGAGGGT