Homologs in group_2435

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_19765 FBDBKF_19765 41.7 Morganella morganii S1 rpnC Recombination-promoting DNA endonuclease RpnC/YadD
EHELCC_10860 EHELCC_10860 41.7 Morganella morganii S2 rpnC Recombination-promoting DNA endonuclease RpnC/YadD
NLDBIP_11205 NLDBIP_11205 41.7 Morganella morganii S4 rpnC Recombination-promoting DNA endonuclease RpnC/YadD
LHKJJB_10150 LHKJJB_10150 41.7 Morganella morganii S3 rpnC Recombination-promoting DNA endonuclease RpnC/YadD
HKOGLL_16315 HKOGLL_16315 41.7 Morganella morganii S5 rpnC Recombination-promoting DNA endonuclease RpnC/YadD
PMI_RS12950 PMI_RS12950 41.8 Proteus mirabilis HI4320 - Rpn family recombination-promoting nuclease/putative transposase

Distribution of the homologs in the orthogroup group_2435

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2435

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P37415 5.12e-78 243 37 3 309 3 PSLT051 Recombination-promoting nuclease pSLT051 Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P31667 3.37e-71 225 38 3 319 1 rpnA Recombination-promoting nuclease RpnA Escherichia coli (strain K12)
P77768 2.53e-69 221 41 1 255 3 rpnB Recombination-promoting nuclease RpnB Escherichia coli (strain K12)
B7NGZ6 5.86e-67 215 36 6 317 1 rpnD Recombination-promoting nuclease RpnD Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC)
P37014 1.46e-66 214 39 2 267 3 yfaD Inactive recombination-promoting nuclease-like protein RpnE Escherichia coli (strain K12)
P58245 8.78e-63 202 41 4 251 3 rpnD Recombination-promoting nuclease RpnD Escherichia coli O157:H7
P31665 8.11e-56 186 32 4 315 3 rpnC Recombination-promoting nuclease RpnC Escherichia coli (strain K12)
P0DP22 2.29e-26 106 30 5 204 5 yjiQ Putative inactive recombination-promoting nuclease-like protein YjiQ Escherichia coli (strain K12)
P0DP21 5.5e-25 99 48 0 96 5 yjiP Putative inactive recombination-promoting nuclease-like protein YjiP Escherichia coli (strain K12)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS13745
Feature type CDS
Gene -
Product Rpn family recombination-promoting nuclease/putative transposase
Location 3052300 - 3053268 (strand: -1)
Length 969 (nucleotides) / 322 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_2435
Orthogroup size 7
N. genomes 6

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Genomic region

Domains

PF04754 Putative transposase, YhgA-like

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG5464 Replication, recombination and repair (L) L Recombination-promoting DNA endonuclease RpnC/YadD

Protein Sequence

MNKPLLISSHDAAFKRFMMNISNAKDFFFIHLSDELKSYCDFSTLKLQNSSFIDIKLRSRMSDILYSVKTKKGNISIYFLIEHQSRPDKMIAWRMMHYAFCTMNQHLQQGYTSLPLVVPILFYHGKRKPYPFSVNWLDCFPLSTLANQLYLNNFALIDLNSIDDEILLTHRKAAVMEIAMKHVNSCDDLDKLAMLLSKAINQKNCSDEDTIAVVQYLFSIMDAADFESIINKIAEQVDNHRETIMNIAWRLENKGFKLGKMEGIEIGKNEGIEIGKNEGIEIGKKIVQIQLAKNLLKENVELEFIERITGLSIQELKILILT

Flanking regions ( +/- flanking 50bp)

GGTCATTTTTTTCTGTAAGCTGGCGGTCCACATTTAGCACGGAGTCAGCGATGAATAAACCTCTTTTAATTTCTTCTCATGATGCTGCATTCAAACGCTTCATGATGAATATTAGTAATGCTAAGGATTTCTTTTTTATCCATTTATCAGACGAATTAAAAAGCTATTGTGATTTTTCAACTTTAAAGCTACAAAATTCCTCTTTTATCGATATTAAATTACGTTCTCGTATGTCAGATATTCTCTACTCAGTGAAAACCAAAAAGGGGAATATCTCAATTTATTTCTTAATTGAGCACCAATCTCGACCAGATAAAATGATCGCTTGGCGTATGATGCACTATGCGTTTTGCACTATGAATCAGCATCTACAGCAAGGTTACACATCTTTGCCGTTGGTTGTTCCTATCTTGTTTTATCATGGCAAACGCAAACCTTATCCTTTTTCTGTCAATTGGTTAGATTGTTTTCCGCTTTCTACATTGGCAAATCAACTCTATCTTAATAATTTTGCATTAATTGATTTGAATTCAATTGATGATGAAATTTTATTAACACATAGAAAAGCCGCTGTAATGGAAATTGCAATGAAACATGTGAACAGTTGCGATGATCTTGATAAGTTAGCGATGCTTCTCTCAAAAGCGATAAATCAGAAAAACTGCAGTGATGAAGACACTATCGCTGTTGTACAATATTTATTCTCAATTATGGATGCGGCGGATTTTGAATCCATCATAAATAAGATAGCTGAACAAGTAGATAACCATAGAGAGACGATTATGAATATTGCATGGCGGTTAGAAAATAAAGGATTTAAATTAGGAAAAATGGAGGGGATAGAGATAGGTAAAAATGAAGGTATAGAAATAGGTAAAAATGAAGGTATAGAAATAGGTAAAAAGATAGTACAAATACAATTAGCAAAAAACTTATTAAAAGAAAACGTTGAGTTAGAATTTATTGAACGAATAACTGGTTTAAGTATACAAGAACTTAAAATATTGATTTTAACCTAATGAAATAGTTAGTTAACTTAATCTTTTTAAGAAAAATTTATTGTTATATC