Homologs in group_2435

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6 homologs were identified in 5 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_19765 FBDBKF_19765 100.0 Morganella morganii S1 rpnC Recombination-promoting DNA endonuclease RpnC/YadD
EHELCC_10860 EHELCC_10860 100.0 Morganella morganii S2 rpnC Recombination-promoting DNA endonuclease RpnC/YadD
NLDBIP_11205 NLDBIP_11205 100.0 Morganella morganii S4 rpnC Recombination-promoting DNA endonuclease RpnC/YadD
HKOGLL_16315 HKOGLL_16315 100.0 Morganella morganii S5 rpnC Recombination-promoting DNA endonuclease RpnC/YadD
PMI_RS12950 PMI_RS12950 99.7 Proteus mirabilis HI4320 - Rpn family recombination-promoting nuclease/putative transposase
PMI_RS13745 PMI_RS13745 41.7 Proteus mirabilis HI4320 - Rpn family recombination-promoting nuclease/putative transposase

Distribution of the homologs in the orthogroup group_2435

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2435

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P37415 1.45e-102 306 49 2 313 3 PSLT051 Recombination-promoting nuclease pSLT051 Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
B7NGZ6 2.11e-88 270 44 6 320 1 rpnD Recombination-promoting nuclease RpnD Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC)
P31667 4.75e-88 268 44 4 312 1 rpnA Recombination-promoting nuclease RpnA Escherichia coli (strain K12)
P37014 1.53e-87 267 45 5 310 3 yfaD Inactive recombination-promoting nuclease-like protein RpnE Escherichia coli (strain K12)
P77768 8.87e-86 262 42 5 316 3 rpnB Recombination-promoting nuclease RpnB Escherichia coli (strain K12)
P58245 4.38e-82 252 48 4 256 3 rpnD Recombination-promoting nuclease RpnD Escherichia coli O157:H7
P31665 4.25e-77 240 44 4 275 3 rpnC Recombination-promoting nuclease RpnC Escherichia coli (strain K12)
P0DP21 2.03e-37 132 58 0 103 5 yjiP Putative inactive recombination-promoting nuclease-like protein YjiP Escherichia coli (strain K12)
P0DP22 3.31e-36 131 37 4 197 5 yjiQ Putative inactive recombination-promoting nuclease-like protein YjiQ Escherichia coli (strain K12)

  • Number of RefSeq hits:

General

Source Morganella morganii S3
Locus tag LHKJJB_10150
Feature type CDS
Gene rpnC
Product Recombination-promoting DNA endonuclease RpnC/YadD
Location 1751 - 2698 (strand: -1)
Length 948 (nucleotides) / 315 (amino acids)

Contig

Accession ZDB_367
Length 191445 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2435
Orthogroup size 7
N. genomes 6

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Genomic region

Domains

PF04754 Putative transposase, YhgA-like

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG5464 Replication, recombination and repair (L) L Recombination-promoting DNA endonuclease RpnC/YadD

Protein Sequence

MTKNTQQPVHDALFKQFLTHPENARDFFSVHLPANILPLCDLSTLRLEPASFVERRLRQLHSDVLYSVQMTEGEGYIYCLIEHQSKPDRLMGFRLMHYAMSAIAHHLKKSPADKTLPLVVPFLFYQGSVCPYPYSMNWLDGFADPALAQQLYTRSFPLVDLSVLSDEEILTHKGIALLELVQKHIRTRDGLMAVLPIIAQIINSQHNTVDQVRSVIEYIAYQGYILDESRFFSQLIALSPEYKTMLTTIAEQLEQKGIEKGIEKGIEKGIEKGIEKGIGLGVEKVARSLLQQGVDLNIIMQCTGLTREKIESLKH

Flanking regions ( +/- flanking 50bp)

TCCAGAGAGTATGTGGCTGATTCTTTTTAGTCATTAATAAGGAGTTTGCTGTGACTAAAAATACACAACAACCGGTACATGATGCGTTATTCAAGCAGTTTTTAACGCATCCTGAGAATGCCCGGGATTTTTTCTCGGTGCATTTGCCGGCCAACATCCTGCCTTTGTGCGATTTAAGTACACTGCGCCTGGAGCCGGCCAGTTTTGTGGAGCGCCGTTTACGTCAGCTGCATTCGGATGTGCTGTATTCCGTGCAGATGACGGAAGGGGAAGGGTATATCTACTGCCTGATCGAGCACCAGTCAAAACCGGATCGGTTAATGGGTTTTCGTCTGATGCATTATGCGATGTCAGCGATAGCGCATCATCTGAAAAAATCGCCGGCGGATAAGACCCTGCCGTTGGTGGTGCCGTTTCTGTTTTATCAGGGCAGTGTTTGTCCTTATCCGTACAGCATGAACTGGCTGGACGGGTTCGCCGATCCGGCGCTGGCTCAGCAGCTGTATACCCGGTCGTTTCCGTTAGTGGATTTGAGTGTGCTCAGTGATGAGGAAATCCTGACACACAAGGGTATTGCCCTGCTGGAGCTGGTTCAGAAACATATTCGGACCCGCGACGGTTTAATGGCGGTATTGCCGATAATCGCGCAGATAATTAACTCGCAACACAATACGGTTGACCAGGTGAGGAGTGTGATAGAATATATTGCCTATCAGGGGTATATTCTGGATGAATCCCGCTTTTTCAGCCAATTGATTGCACTGTCACCGGAGTATAAAACGATGCTGACAACGATTGCAGAACAACTTGAGCAAAAAGGTATCGAAAAAGGTATCGAAAAAGGTATCGAAAAAGGTATCGAAAAAGGTATCGAAAAAGGTATTGGCCTGGGTGTTGAAAAAGTCGCCCGCTCATTATTACAACAGGGGGTTGATCTGAACATTATTATGCAATGTACCGGACTGACCCGGGAAAAGATTGAGTCATTAAAACATTAATCTTTTCTGTTTTTACTCTCAAATGCCGGCATGACTGCCGGCATTTTTTA