Homologs in group_2435

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_19765 FBDBKF_19765 99.7 Morganella morganii S1 rpnC Recombination-promoting DNA endonuclease RpnC/YadD
EHELCC_10860 EHELCC_10860 99.7 Morganella morganii S2 rpnC Recombination-promoting DNA endonuclease RpnC/YadD
NLDBIP_11205 NLDBIP_11205 99.7 Morganella morganii S4 rpnC Recombination-promoting DNA endonuclease RpnC/YadD
LHKJJB_10150 LHKJJB_10150 99.7 Morganella morganii S3 rpnC Recombination-promoting DNA endonuclease RpnC/YadD
HKOGLL_16315 HKOGLL_16315 99.7 Morganella morganii S5 rpnC Recombination-promoting DNA endonuclease RpnC/YadD
PMI_RS13745 PMI_RS13745 41.8 Proteus mirabilis HI4320 - Rpn family recombination-promoting nuclease/putative transposase

Distribution of the homologs in the orthogroup group_2435

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2435

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P37415 4.75e-98 294 48 4 313 3 PSLT051 Recombination-promoting nuclease pSLT051 Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
B7NGZ6 3.56e-89 271 44 6 312 1 rpnD Recombination-promoting nuclease RpnD Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC)
P31667 4.64e-89 270 46 4 304 1 rpnA Recombination-promoting nuclease RpnA Escherichia coli (strain K12)
P37014 2.85e-88 268 46 5 303 3 yfaD Inactive recombination-promoting nuclease-like protein RpnE Escherichia coli (strain K12)
P77768 7.71e-87 265 43 5 308 3 rpnB Recombination-promoting nuclease RpnB Escherichia coli (strain K12)
P58245 1.31e-81 250 47 4 256 3 rpnD Recombination-promoting nuclease RpnD Escherichia coli O157:H7
P31665 2.34e-77 241 42 5 296 3 rpnC Recombination-promoting nuclease RpnC Escherichia coli (strain K12)
P0DP21 2.23e-38 134 58 0 103 5 yjiP Putative inactive recombination-promoting nuclease-like protein YjiP Escherichia coli (strain K12)
P0DP22 5.36e-37 133 38 4 189 5 yjiQ Putative inactive recombination-promoting nuclease-like protein YjiQ Escherichia coli (strain K12)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS12950
Feature type CDS
Gene -
Product Rpn family recombination-promoting nuclease/putative transposase
Location 2872070 - 2872993 (strand: -1)
Length 924 (nucleotides) / 307 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_2435
Orthogroup size 7
N. genomes 6

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Genomic region

Domains

PF04754 Putative transposase, YhgA-like

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG5464 Replication, recombination and repair (L) L Recombination-promoting DNA endonuclease RpnC/YadD

Protein Sequence

MTKNTQQPVHDALFKQFLTHPENARDFFSVHLPANILPLCDLSTLRLEPASFVERRLRQLHSDVLYSVQMTEGEGYIYCLIEHQSKPDRLMGFRLMHYAMSAIAHHLKKSPADKTLPLVVPFLFYQGSVCPYPYSMNWLDGFADPALAQQLYTRSFPLVDLSVLSDEEILTHKGIALLELVQKHIRTRDGLMAVLPIIAQIINSQHNTVDQVRSVIEYIAYQGYILDESRFFSQFIALSPEYKTMLTTIAEQLEQKGIEKGIEKGIEKGIGLGVEKVARSLLQQGVDLNIIMQCTGLTREKIESLKH

Flanking regions ( +/- flanking 50bp)

TCCAGAGAGTATGTGGCTGATTCTTTTTAGTCATTAATAAGGAGTTTGCTGTGACTAAAAATACACAACAACCGGTACATGATGCGTTATTCAAGCAGTTTTTAACGCATCCTGAGAATGCCCGGGATTTTTTCTCGGTGCATTTGCCGGCCAACATCCTGCCTTTGTGCGATTTAAGTACACTGCGCCTGGAGCCGGCCAGTTTTGTGGAGCGCCGTTTACGTCAGCTGCATTCGGATGTGCTGTATTCCGTGCAGATGACGGAAGGGGAAGGGTATATCTACTGCCTGATCGAGCACCAGTCAAAACCGGATCGGTTAATGGGTTTTCGTCTGATGCATTATGCGATGTCAGCGATAGCGCATCATCTGAAAAAATCGCCGGCGGATAAGACCCTGCCGTTGGTGGTGCCGTTTCTGTTTTATCAGGGCAGTGTTTGTCCTTATCCGTACAGCATGAACTGGCTGGACGGGTTCGCCGATCCGGCGCTGGCTCAGCAGCTGTATACCCGGTCGTTTCCGTTAGTGGATTTGAGTGTGCTCAGTGATGAGGAAATCCTGACACACAAGGGTATTGCCCTGCTGGAGCTGGTTCAGAAACATATTCGGACCCGCGACGGTTTAATGGCGGTATTGCCGATAATCGCGCAGATAATTAACTCGCAACACAATACGGTTGACCAGGTGAGGAGTGTGATAGAATATATTGCCTATCAGGGGTATATTCTGGATGAATCCCGCTTTTTCAGCCAATTCATTGCACTGTCACCGGAGTATAAAACGATGCTGACAACGATTGCAGAACAACTTGAGCAAAAAGGTATCGAAAAAGGTATCGAAAAAGGTATCGAAAAAGGTATTGGCCTGGGTGTTGAAAAAGTCGCCCGCTCATTATTACAACAGGGGGTTGATCTGAACATTATTATGCAATGTACCGGACTGACCCGGGAAAAGATTGAGTCATTAAAACATTAATCTTTTCTGTTTTTACTCTCAAATGCCGGCATGACTGCCGGCATTTTTTA