Homologs in group_3

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24 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_14600 FBDBKF_14600 22.9 Morganella morganii S1 fimC P pilus assembly protein, chaperone PapD
EHELCC_15405 EHELCC_15405 22.9 Morganella morganii S2 fimC P pilus assembly protein, chaperone PapD
NLDBIP_15935 NLDBIP_15935 22.9 Morganella morganii S4 fimC P pilus assembly protein, chaperone PapD
LHKJJB_15905 LHKJJB_15905 22.9 Morganella morganii S3 fimC P pilus assembly protein, chaperone PapD
HKOGLL_15025 HKOGLL_15025 22.9 Morganella morganii S5 fimC P pilus assembly protein, chaperone PapD
F4V73_RS01040 F4V73_RS01040 25.0 Morganella psychrotolerans - fimbria/pilus periplasmic chaperone
F4V73_RS01065 F4V73_RS01065 25.5 Morganella psychrotolerans - molecular chaperone
F4V73_RS01680 F4V73_RS01680 26.4 Morganella psychrotolerans - fimbria/pilus periplasmic chaperone
F4V73_RS01855 F4V73_RS01855 25.0 Morganella psychrotolerans - molecular chaperone
F4V73_RS05995 F4V73_RS05995 12.5 Morganella psychrotolerans - fimbria/pilus periplasmic chaperone
F4V73_RS07395 F4V73_RS07395 24.2 Morganella psychrotolerans - molecular chaperone
F4V73_RS08430 F4V73_RS08430 24.5 Morganella psychrotolerans - molecular chaperone
F4V73_RS08450 F4V73_RS08450 24.0 Morganella psychrotolerans - molecular chaperone
F4V73_RS08455 F4V73_RS08455 26.2 Morganella psychrotolerans - molecular chaperone
F4V73_RS09380 F4V73_RS09380 22.6 Morganella psychrotolerans - molecular chaperone
F4V73_RS10245 F4V73_RS10245 31.7 Morganella psychrotolerans - molecular chaperone
F4V73_RS10260 F4V73_RS10260 27.2 Morganella psychrotolerans - molecular chaperone
F4V73_RS10275 F4V73_RS10275 24.4 Morganella psychrotolerans - molecular chaperone
F4V73_RS10895 F4V73_RS10895 24.8 Morganella psychrotolerans - molecular chaperone
F4V73_RS12585 F4V73_RS12585 23.0 Morganella psychrotolerans - molecular chaperone
F4V73_RS13305 F4V73_RS13305 27.1 Morganella psychrotolerans - molecular chaperone
F4V73_RS13315 F4V73_RS13315 21.5 Morganella psychrotolerans - molecular chaperone
F4V73_RS13325 F4V73_RS13325 24.9 Morganella psychrotolerans - molecular chaperone
PMI_RS16665 PMI_RS16665 29.0 Proteus mirabilis HI4320 - molecular chaperone

Distribution of the homologs in the orthogroup group_3

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_3

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P45991 3.56e-16 79 28 8 218 3 hifB Chaperone protein HifB Haemophilus influenzae
P46004 7.64e-16 78 25 10 258 3 aggD Chaperone protein AggD Escherichia coli
P33407 2.32e-15 77 25 10 254 3 myfB Chaperone protein MyfB Yersinia enterocolitica
P35757 1.65e-14 74 27 7 218 3 hifB Chaperone protein HifB Haemophilus influenzae
P37923 3.04e-14 73 30 10 214 3 fimC Chaperone protein FimC Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P69966 5.89e-14 73 25 9 230 3 psaB Chaperone protein PsaB Yersinia pseudotuberculosis serotype I (strain IP32953)
P69965 5.89e-14 73 25 9 230 3 psaB Chaperone protein PsaB Yersinia pestis
P75856 7.08e-14 72 28 8 207 2 elfD Probable fimbrial chaperone protein ElfD Escherichia coli (strain K12)
P62609 1.3e-13 71 27 8 205 1 focC Chaperone protein FocC Escherichia coli
P62610 1.3e-13 71 27 8 205 3 focC Chaperone protein FocC Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P59590 1.87e-13 71 26 12 251 3 fimC Chaperone protein FimC Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
Q8X5E4 4.12e-13 70 27 8 207 2 elfD Probable fimbrial chaperone protein ElfD Escherichia coli O157:H7
P31697 1.02e-12 69 26 12 251 1 fimC Chaperone protein FimC Escherichia coli (strain K12)
P77249 1.98e-12 68 27 11 246 2 sfmC Probable fimbrial chaperone SfmC Escherichia coli (strain K12)
P77616 3.03e-12 68 33 12 195 3 yqiH Uncharacterized fimbrial chaperone YqiH Escherichia coli (strain K12)
P43661 2.58e-11 65 28 11 209 3 lpfB Chaperone protein LpfB Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P33409 3.01e-11 65 28 5 175 3 fimB Chaperone protein FimB/FhaD Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251)
P53516 1.93e-10 63 25 7 202 3 afaB Chaperone protein AfaB Escherichia coli
P15319 2.11e-10 62 33 5 139 1 papD Chaperone protein PapD Escherichia coli
P26926 5.04e-10 62 26 11 231 1 caf1M Chaperone protein caf1M Yersinia pestis
P21646 9.37e-10 60 27 8 183 3 mrkB Chaperone protein MrkB Klebsiella pneumoniae
Q8X5K6 2.95e-09 59 25 7 185 2 lpfB Probable fimbrial chaperone LpfB Escherichia coli O157:H7
P75749 3.82e-09 59 27 3 139 3 ybgP Uncharacterized fimbrial chaperone YbgP Escherichia coli (strain K12)
P53519 5.52e-09 58 23 5 218 3 cssC Chaperone protein CssC Escherichia coli
P53520 9.49e-09 58 26 5 179 3 pmfD Chaperone protein PmfD Proteus mirabilis (strain HI4320)
P42914 1e-08 57 29 3 127 2 yraI Probable fimbrial chaperone YraI Escherichia coli (strain K12)
P53518 1.37e-08 57 23 5 219 3 cssC Chaperone protein CssC Escherichia coli
P33387 8.66e-08 55 24 10 258 3 sefB Chaperone protein SefB Salmonella enteritidis
P77599 7.86e-07 52 29 9 163 2 yfcS Probable fimbrial chaperone YfcS Escherichia coli (strain K12)
P33128 1.66e-06 51 26 7 191 1 yadV Probable fimbrial chaperone YadV Escherichia coli (strain K12)
P15483 9.22e-06 49 26 9 210 3 None Chaperone protein CS3-1 Escherichia coli
P25402 1.54e-05 48 25 11 226 3 fanE Chaperone protein FanE Escherichia coli
P25401 0.000116 46 27 7 132 1 faeE Chaperone protein FaeE Escherichia coli
Q05433 0.000454 44 26 6 132 3 clpE Chaperone protein ClpE Escherichia coli

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS12530
Feature type CDS
Gene -
Product molecular chaperone
Location 2779505 - 2780320 (strand: -1)
Length 816 (nucleotides) / 271 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_3
Orthogroup size 25
N. genomes 7

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Genomic region

Domains

PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain
PF02753 Pili assembly chaperone PapD, C-terminal domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3121 Extracellular structures (W) W P pilus assembly protein, chaperone PapD

Protein Sequence

MLSFLRGRKKNIIQIVIFCLFFLSYSVTSKAVEKIENDTVDLTDFGKNGFSFVVKRYIYLESDIKGISISLKNNNNSAYLINSSILFNDDDKNVPIVNKDRERTPFMILPPLYRLEPSSEYSWNIRRISEGSNDMALPKDRESLFWIAFRAVPLKDSKIEEKKSVSLTITPTFFFKLIYRPESIMALENKDVIDDVIVEKVNENIVINNKSPLYMTFEYLKVGEVEIKNDGRAITVKPFSTVSVEAPKNVQGKLSWRFNDENFFIIKDKEY

Flanking regions ( +/- flanking 50bp)

TGGTGGATTATCAAATACATTTGAAAATAAAATAATTGTGGAGTGACTAAATGTTATCTTTTTTAAGAGGTAGAAAAAAAAATATTATCCAGATAGTCATATTCTGCCTATTTTTTCTATCTTATTCAGTCACATCGAAAGCAGTTGAAAAAATAGAAAACGATACTGTGGATCTAACAGATTTCGGGAAAAATGGTTTTTCTTTTGTAGTAAAAAGATATATCTATCTGGAAAGTGATATAAAAGGTATCTCTATCTCTTTAAAAAATAATAACAATAGTGCTTATTTAATTAATAGCTCTATTTTATTTAATGATGATGATAAAAATGTACCTATAGTGAATAAAGATCGTGAAAGAACACCTTTTATGATTTTACCACCTTTGTATCGTTTAGAACCCTCTAGTGAATATAGCTGGAATATTCGTCGTATTAGTGAAGGTTCTAATGATATGGCGTTACCAAAAGACAGAGAAAGCTTATTTTGGATTGCATTTAGAGCAGTTCCTCTTAAGGATAGTAAAATTGAGGAAAAGAAATCTGTGTCACTAACGATAACACCTACTTTCTTCTTCAAATTAATTTATAGACCTGAGTCAATAATGGCATTGGAAAATAAAGATGTTATTGATGATGTTATTGTTGAAAAGGTAAATGAGAACATAGTTATAAATAATAAATCACCACTTTATATGACTTTTGAATATTTAAAAGTGGGCGAGGTTGAAATAAAAAATGATGGTAGAGCAATAACGGTAAAACCATTCTCTACAGTATCAGTTGAAGCACCTAAAAATGTTCAAGGAAAGCTGAGTTGGAGATTCAATGATGAAAATTTCTTTATAATAAAAGATAAAGAATATTAACTTAACAATAATTCTTATTTATGGGTGGTCTTTGGGGTGGTTTATGAAAC