Homologs in group_3

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24 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_14600 FBDBKF_14600 24.0 Morganella morganii S1 fimC P pilus assembly protein, chaperone PapD
EHELCC_15405 EHELCC_15405 24.0 Morganella morganii S2 fimC P pilus assembly protein, chaperone PapD
NLDBIP_15935 NLDBIP_15935 24.0 Morganella morganii S4 fimC P pilus assembly protein, chaperone PapD
LHKJJB_15905 LHKJJB_15905 24.0 Morganella morganii S3 fimC P pilus assembly protein, chaperone PapD
HKOGLL_15025 HKOGLL_15025 24.0 Morganella morganii S5 fimC P pilus assembly protein, chaperone PapD
F4V73_RS01040 F4V73_RS01040 27.6 Morganella psychrotolerans - fimbria/pilus periplasmic chaperone
F4V73_RS01065 F4V73_RS01065 22.9 Morganella psychrotolerans - molecular chaperone
F4V73_RS01680 F4V73_RS01680 25.7 Morganella psychrotolerans - fimbria/pilus periplasmic chaperone
F4V73_RS01855 F4V73_RS01855 24.8 Morganella psychrotolerans - molecular chaperone
F4V73_RS05995 F4V73_RS05995 15.0 Morganella psychrotolerans - fimbria/pilus periplasmic chaperone
F4V73_RS07395 F4V73_RS07395 22.4 Morganella psychrotolerans - molecular chaperone
F4V73_RS08430 F4V73_RS08430 26.7 Morganella psychrotolerans - molecular chaperone
F4V73_RS08450 F4V73_RS08450 28.8 Morganella psychrotolerans - molecular chaperone
F4V73_RS08455 F4V73_RS08455 30.5 Morganella psychrotolerans - molecular chaperone
F4V73_RS09380 F4V73_RS09380 22.3 Morganella psychrotolerans - molecular chaperone
F4V73_RS10245 F4V73_RS10245 24.6 Morganella psychrotolerans - molecular chaperone
F4V73_RS10260 F4V73_RS10260 29.9 Morganella psychrotolerans - molecular chaperone
F4V73_RS10275 F4V73_RS10275 24.4 Morganella psychrotolerans - molecular chaperone
F4V73_RS10895 F4V73_RS10895 23.7 Morganella psychrotolerans - molecular chaperone
F4V73_RS12585 F4V73_RS12585 23.0 Morganella psychrotolerans - molecular chaperone
F4V73_RS13305 F4V73_RS13305 29.6 Morganella psychrotolerans - molecular chaperone
F4V73_RS13315 F4V73_RS13315 25.6 Morganella psychrotolerans - molecular chaperone
PMI_RS12530 PMI_RS12530 24.9 Proteus mirabilis HI4320 - molecular chaperone
PMI_RS16665 PMI_RS16665 23.4 Proteus mirabilis HI4320 - molecular chaperone

Distribution of the homologs in the orthogroup group_3

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_3

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P59590 2.34e-20 89 31 9 238 3 fimC Chaperone protein FimC Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P62609 8.09e-20 88 28 6 226 1 focC Chaperone protein FocC Escherichia coli
P62610 8.09e-20 88 28 6 226 3 focC Chaperone protein FocC Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P31697 1.38e-19 87 31 9 238 1 fimC Chaperone protein FimC Escherichia coli (strain K12)
P42914 2.1e-19 87 29 10 247 2 yraI Probable fimbrial chaperone YraI Escherichia coli (strain K12)
Q8X5E4 1.06e-18 85 28 9 236 2 elfD Probable fimbrial chaperone protein ElfD Escherichia coli O157:H7
P75856 1.66e-18 84 28 9 236 2 elfD Probable fimbrial chaperone protein ElfD Escherichia coli (strain K12)
P43661 2.79e-16 78 32 6 186 3 lpfB Chaperone protein LpfB Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P33342 3.16e-15 75 26 7 230 2 yehC Probable fimbrial chaperone YehC Escherichia coli (strain K12)
P45991 1.6e-14 73 27 9 237 3 hifB Chaperone protein HifB Haemophilus influenzae
Q8X5K6 1.63e-14 73 34 9 200 2 lpfB Probable fimbrial chaperone LpfB Escherichia coli O157:H7
P33409 5.51e-14 72 24 5 234 3 fimB Chaperone protein FimB/FhaD Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251)
P35757 1.69e-13 71 27 7 208 3 hifB Chaperone protein HifB Haemophilus influenzae
P77249 1.94e-12 68 25 6 235 2 sfmC Probable fimbrial chaperone SfmC Escherichia coli (strain K12)
P69966 3.8e-12 67 25 8 240 3 psaB Chaperone protein PsaB Yersinia pseudotuberculosis serotype I (strain IP32953)
P69965 3.8e-12 67 25 8 240 3 psaB Chaperone protein PsaB Yersinia pestis
P37923 1.09e-11 65 32 8 201 3 fimC Chaperone protein FimC Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P26926 5e-11 64 24 9 226 1 caf1M Chaperone protein caf1M Yersinia pestis
P46004 2.49e-10 62 25 9 257 3 aggD Chaperone protein AggD Escherichia coli
P33407 8.74e-10 60 24 9 258 3 myfB Chaperone protein MyfB Yersinia enterocolitica
P15483 7.32e-09 58 26 8 224 3 None Chaperone protein CS3-1 Escherichia coli
P53516 1.5e-08 57 25 6 202 3 afaB Chaperone protein AfaB Escherichia coli
P33128 1.61e-08 57 30 9 171 1 yadV Probable fimbrial chaperone YadV Escherichia coli (strain K12)
P53520 2.69e-08 56 27 9 195 3 pmfD Chaperone protein PmfD Proteus mirabilis (strain HI4320)
P21646 4.07e-08 55 27 8 198 3 mrkB Chaperone protein MrkB Klebsiella pneumoniae
P53519 1.07e-07 54 24 5 216 3 cssC Chaperone protein CssC Escherichia coli
P25401 1.44e-07 54 25 8 218 1 faeE Chaperone protein FaeE Escherichia coli
Q05433 1.72e-07 54 26 7 192 3 clpE Chaperone protein ClpE Escherichia coli
P75749 3.23e-07 53 25 6 170 3 ybgP Uncharacterized fimbrial chaperone YbgP Escherichia coli (strain K12)
P53518 4.99e-07 52 23 5 216 3 cssC Chaperone protein CssC Escherichia coli
P77599 5.66e-07 52 25 6 166 2 yfcS Probable fimbrial chaperone YfcS Escherichia coli (strain K12)
P33387 1.54e-06 51 26 8 219 3 sefB Chaperone protein SefB Salmonella enteritidis
P15319 0.000357 44 25 7 185 1 papD Chaperone protein PapD Escherichia coli

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS13325
Feature type CDS
Gene -
Product molecular chaperone
Location 294750 - 295502 (strand: 1)
Length 753 (nucleotides) / 250 (amino acids)

Contig

Accession term accessions NZ_VXKB01000003 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 425895 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_3
Orthogroup size 25
N. genomes 7

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Genomic region

Domains

PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain
PF02753 Pili assembly chaperone PapD, C-terminal domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3121 Extracellular structures (W) W P pilus assembly protein, chaperone PapD

Protein Sequence

MKYLFITLCILLSSLTNVQAAPDNSGGLSLHVTRVIFHEDDRKGVTLNIINNSDNDYLLQSAVRDIDPQTGGVSQSERKKMPFIITPPLDKFAAHSEKTLHIRRINSITLSDKNESAFFISLKAIPVTEQPDAADNSIVLATVINLKLFYRPKELTRDFIYASSSLPVLCKKGNILIAKNNTPYWLVFSSLKTDKENIGEEQLRHMVPPHENYPYKIQSDLNHQQAEWTLIDESGWITPSEKQTISDCSQ

Flanking regions ( +/- flanking 50bp)

AGAAGTTTCACTACAGTGTCAGTAAAACTTATCAGAAAATGGTACTTATTATGAAATATCTTTTTATAACATTATGTATTTTATTAAGTTCGCTGACAAATGTTCAGGCAGCACCTGATAATAGCGGCGGATTATCCTTACATGTTACCCGGGTTATTTTTCATGAAGATGACCGGAAAGGCGTTACGCTCAACATTATAAATAACTCAGATAATGACTACCTTCTTCAATCTGCTGTCCGTGATATTGATCCGCAAACAGGAGGCGTAAGTCAGTCAGAACGTAAAAAGATGCCATTTATCATCACACCACCGCTTGATAAATTTGCTGCACACAGTGAAAAGACACTGCATATTCGCAGGATAAACAGTATTACTCTGTCAGATAAGAATGAATCGGCTTTCTTTATTTCGTTAAAAGCAATTCCGGTTACCGAGCAACCTGATGCTGCTGATAATAGTATTGTTCTGGCTACTGTTATTAATCTAAAATTATTTTATCGGCCAAAAGAATTAACCCGGGATTTCATTTATGCATCATCTTCATTACCGGTGTTATGTAAAAAAGGCAATATACTGATTGCAAAAAACAATACGCCATACTGGCTGGTATTCAGTTCTCTTAAAACAGATAAAGAAAATATCGGCGAAGAGCAATTACGCCATATGGTACCACCGCATGAAAATTATCCGTATAAAATTCAAAGTGATTTAAATCATCAGCAAGCGGAATGGACACTAATTGATGAAAGTGGCTGGATAACACCATCAGAAAAACAAACTATATCTGATTGCAGCCAATAGTAATTATTATTTTTCAGGTGAAAAAATGACAACAATAAAAAGAAGTATAA