Homologs in group_188

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8 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_08195 FBDBKF_08195 29.3 Morganella morganii S1 rep DNA helicase Rep
EHELCC_13330 EHELCC_13330 29.3 Morganella morganii S2 rep DNA helicase Rep
NLDBIP_13670 NLDBIP_13670 29.3 Morganella morganii S4 rep DNA helicase Rep
LHKJJB_12885 LHKJJB_12885 29.3 Morganella morganii S3 rep DNA helicase Rep
HKOGLL_12145 HKOGLL_12145 29.3 Morganella morganii S5 rep DNA helicase Rep
F4V73_RS18740 F4V73_RS18740 28.3 Morganella psychrotolerans rep DNA helicase Rep
PMI_RS12040 PMI_RS12040 25.4 Proteus mirabilis HI4320 - ATP-dependent helicase
PMI_RS16455 PMI_RS16455 29.6 Proteus mirabilis HI4320 rep DNA helicase Rep

Distribution of the homologs in the orthogroup group_188

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_188

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P75438 6.43e-14 78 24 23 492 3 MPN_340 Probable DNA helicase MPN_340 Mycoplasma pneumoniae (strain ATCC 29342 / M129 / Subtype 1)
P45612 9.03e-13 75 22 12 369 3 uvrD Probable DNA helicase II homolog Mycoplasma capricolum subsp. capricolum (strain California kid / ATCC 27343 / NCTC 10154)
P75437 4.09e-12 73 22 10 396 3 uvrD Probable DNA helicase II homolog Mycoplasma pneumoniae (strain ATCC 29342 / M129 / Subtype 1)
P75437 0.00021 48 30 5 134 3 uvrD Probable DNA helicase II homolog Mycoplasma pneumoniae (strain ATCC 29342 / M129 / Subtype 1)
P15038 4.79e-11 69 24 20 497 1 helD DNA helicase IV Escherichia coli (strain K12)
P47486 3e-10 67 23 13 366 3 uvrD Probable DNA helicase II homolog Mycoplasma genitalium (strain ATCC 33530 / DSM 19775 / NCTC 10195 / G37)
P47486 0.000338 47 32 1 77 3 uvrD Probable DNA helicase II homolog Mycoplasma genitalium (strain ATCC 33530 / DSM 19775 / NCTC 10195 / G37)
Q8NVT1 7.08e-09 62 23 13 371 3 pcrA ATP-dependent DNA helicase PcrA Staphylococcus aureus (strain MW2)
Q6G828 7.08e-09 62 23 13 371 3 pcrA ATP-dependent DNA helicase PcrA Staphylococcus aureus (strain MSSA476)
Q5HEL7 7.08e-09 62 23 13 371 3 pcrA ATP-dependent DNA helicase PcrA Staphylococcus aureus (strain COL)
Q53727 7.08e-09 62 23 13 371 1 pcrA ATP-dependent DNA helicase PcrA Staphylococcus aureus (strain NCTC 8325 / PS 47)
P64319 7.26e-09 62 23 13 371 1 pcrA ATP-dependent DNA helicase PcrA Staphylococcus aureus (strain N315)
P64318 7.26e-09 62 23 13 371 3 pcrA ATP-dependent DNA helicase PcrA Staphylococcus aureus (strain Mu50 / ATCC 700699)
Q6GFF2 7.39e-09 62 23 13 371 3 pcrA ATP-dependent DNA helicase PcrA Staphylococcus aureus (strain MRSA252)
Q8CRT9 1.3e-08 62 23 14 372 3 pcrA ATP-dependent DNA helicase PcrA Staphylococcus epidermidis (strain ATCC 12228 / FDA PCI 1200)
Q5HN29 1.31e-08 62 23 14 372 3 pcrA ATP-dependent DNA helicase PcrA Staphylococcus epidermidis (strain ATCC 35984 / DSM 28319 / BCRC 17069 / CCUG 31568 / BM 3577 / RP62A)
O31626 4.6e-08 60 22 14 382 1 yjcD Putative ATP-dependent DNA helicase YjcD Bacillus subtilis (strain 168)
O31626 0.000716 46 32 0 76 1 yjcD Putative ATP-dependent DNA helicase YjcD Bacillus subtilis (strain 168)
P44804 4.76e-07 57 40 1 71 3 rep ATP-dependent DNA helicase Rep Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P53528 9.34e-07 56 23 16 400 3 uvrD2 ATP-dependent DNA helicase UvrD2 Mycobacterium leprae (strain TN)
P9WMP9 2.04e-06 55 22 10 387 1 uvrD2 ATP-dependent DNA helicase UvrD2 Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WMP8 2.04e-06 55 22 10 387 3 uvrD2 ATP-dependent DNA helicase UvrD2 Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
P64321 2.04e-06 55 22 10 387 3 uvrD2 ATP-dependent DNA helicase UvrD2 Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)
P9WMQ1 9.9e-06 52 22 18 400 1 uvrD1 ATP-dependent DNA helicase UvrD1 Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WMQ0 9.9e-06 52 22 18 400 3 uvrD1 ATP-dependent DNA helicase UvrD1 Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
P0A5A4 9.9e-06 52 22 18 400 3 uvrD1 ATP-dependent DNA helicase UvrD1 Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)
O51889 1.16e-05 52 41 1 68 3 rep ATP-dependent DNA helicase Rep Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
Q4ULN5 1.18e-05 52 24 16 408 3 uvrD Probable DNA helicase II homolog Rickettsia felis (strain ATCC VR-1525 / URRWXCal2)
Q9ZD95 1.27e-05 52 24 14 393 3 uvrD Probable DNA helicase II homolog Rickettsia prowazekii (strain Madrid E)
Q9ZD95 0.000666 46 39 1 63 3 uvrD Probable DNA helicase II homolog Rickettsia prowazekii (strain Madrid E)
Q9L6S1 1.44e-05 52 41 1 65 3 rep ATP-dependent DNA helicase Rep Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P57654 2.27e-05 51 38 1 73 3 rep ATP-dependent DNA helicase Rep Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS)
P09980 4.04e-05 50 40 1 65 1 rep ATP-dependent DNA helicase Rep Escherichia coli (strain K12)
O32215 6.92e-05 50 21 9 260 1 helD DNA helicase IV Bacillus subtilis (strain 168)
Q05311 0.000124 49 36 1 72 3 uvrD DNA helicase II Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P03018 0.000124 49 36 1 72 1 uvrD DNA helicase II Escherichia coli (strain K12)
Q9S3Q0 0.000128 49 42 2 64 3 pcrA ATP-dependent DNA helicase PcrA Leuconostoc citreum
Q89A21 0.000218 48 37 2 74 3 rep ATP-dependent DNA helicase Rep Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp)
Q68WT1 0.0003 47 27 3 169 3 uvrD DNA helicase II Rickettsia typhi (strain ATCC VR-144 / Wilmington)
D1KF50 0.00059 47 38 1 89 1 SRS2 ATP-dependent DNA helicase SRS2-like protein At4g25120 Arabidopsis thaliana

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS12245
Feature type CDS
Gene -
Product UvrD-helicase domain-containing protein
Location 2704877 - 2707003 (strand: -1)
Length 2127 (nucleotides) / 708 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_188
Orthogroup size 9
N. genomes 7

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Genomic region

Domains

PF00580 UvrD/REP helicase N-terminal domain
PF13361 UvrD-like helicase C-terminal domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3972 Replication, recombination and repair (L) L Superfamily I DNA and RNA helicases

Protein Sequence

MDTPKIAIASDFLLSFAAIPKAQQKKVQEFLSKFRENPTSSAINYEKIRDAKSKNVHSVRIDQAYRGIVLKPEKGNVYMLMFVALHDDAYDWARTHRCEIHPSTGAIQIIDVSNVEAEIVEPTQGISSQNSPLFAQFKEKQILALGVPESFIQRVMSIATEKQLEQLEESLPTEAFEALFMLAAGDDYESVYNTYNDQINGDVEIDVEDFDAALQRAVTLRSFKVVTDDLELQKMLNAPLEQWRVFLHPSQRKLVALEAKGPTRVLGGAGTGKTVVAMHRAVHLAKKLILEQSNRKILLTTFTKNLASDIKANIKKIATDEQLARIEVVNIDGWVSRLLKQFKYDYKVVYEGDAKRKKCWDIAVSQAPAEPYFPDSFYQEEWRLIVQANGIKTKQEYLKVSRVGRGTSLSRLQRSLVWPVFEEYRNQLNRNQIREINDAMLDAMALINEQQLVLPYSSIIVDEAQDMGSQAFTLLRSIVPEQENDLFIVGDGHQRIYRNKVVLGRCGINVRGRRSQKLKINYRTTEETRRFATAILENVPVDDLDGDFDKSSDYLSLFHGDLPIVQACTSFDEECGFIRKQIESLIECGVPLKNICIVSRTNALRDNYKSAFEQAGFDSYSLSSESSDNDKPGLRFATMHRVKGLEFQYIFIAGANEGVIPLQMAITEDPVEKRDYDFNERALLHVAATRAIKGLVVTSSGQLSPYLI

Flanking regions ( +/- flanking 50bp)

CAGCTAAATTTAAAATTAAAACATAATGATAGGTAACCACAATGTCAGGTATGGATACTCCAAAAATTGCAATTGCATCCGATTTTTTGCTCTCTTTTGCTGCGATTCCCAAAGCACAACAAAAGAAGGTGCAAGAGTTTTTGAGCAAGTTTCGTGAAAACCCCACAAGCTCTGCGATTAATTATGAAAAAATCCGTGATGCGAAAAGTAAGAATGTGCATTCGGTAAGAATCGATCAAGCTTATCGAGGCATTGTTCTTAAACCAGAAAAAGGCAACGTTTACATGTTGATGTTTGTTGCTTTGCATGATGATGCTTATGATTGGGCTCGTACTCATCGCTGCGAAATTCACCCGTCAACAGGCGCCATTCAGATTATTGATGTTTCTAATGTGGAAGCTGAGATTGTTGAGCCGACACAAGGGATTTCTTCGCAAAACTCACCACTTTTTGCACAGTTTAAAGAAAAGCAAATTCTCGCGCTTGGTGTACCAGAAAGTTTTATCCAACGTGTGATGTCAATTGCGACTGAGAAACAACTTGAACAGTTGGAAGAGAGTTTGCCAACTGAAGCCTTTGAGGCATTGTTTATGTTGGCCGCTGGAGACGACTATGAATCTGTTTATAACACCTATAACGACCAAATTAATGGCGATGTTGAGATTGATGTAGAAGACTTTGATGCGGCGTTGCAACGAGCCGTTACTCTGCGCTCTTTCAAAGTGGTTACCGATGACCTTGAACTCCAAAAGATGCTTAATGCACCGTTGGAACAATGGCGAGTATTCTTGCACCCAAGCCAACGAAAGTTGGTTGCACTAGAGGCTAAAGGTCCAACCCGAGTGCTCGGCGGTGCAGGGACAGGGAAAACTGTAGTGGCGATGCATCGCGCTGTCCATTTGGCGAAGAAGCTTATTTTAGAACAGAGTAATCGTAAGATCTTATTAACGACTTTTACCAAAAATTTAGCCTCTGATATTAAAGCAAACATCAAAAAAATAGCAACAGATGAACAATTGGCACGAATTGAAGTCGTCAACATTGATGGCTGGGTTTCTCGTCTGTTGAAGCAGTTTAAATATGACTACAAAGTAGTGTATGAGGGTGATGCTAAACGAAAAAAATGTTGGGATATCGCTGTTAGCCAAGCGCCTGCCGAGCCGTATTTCCCAGATTCTTTTTATCAAGAAGAATGGCGCCTGATTGTTCAAGCAAATGGGATTAAAACCAAGCAAGAGTATTTAAAGGTAAGCCGTGTTGGGCGAGGTACCTCATTGAGCCGTTTGCAGCGCTCTCTCGTTTGGCCTGTTTTCGAAGAATATCGAAACCAACTTAACCGAAATCAAATTCGAGAAATTAATGATGCGATGTTAGACGCGATGGCGCTCATTAATGAGCAACAACTCGTTCTTCCATATAGTTCGATCATCGTCGATGAAGCTCAGGATATGGGGAGTCAAGCTTTCACGCTACTGAGAAGTATCGTGCCAGAACAAGAGAATGACCTATTTATTGTTGGTGATGGCCACCAGCGCATTTATCGCAATAAGGTGGTACTTGGCCGTTGCGGCATCAATGTTCGTGGACGTCGTTCTCAAAAGTTAAAGATTAACTATCGTACCACTGAGGAAACCCGTCGATTTGCCACAGCTATTTTAGAAAATGTGCCAGTCGATGATCTTGATGGTGACTTTGATAAATCGAGTGACTATTTATCTCTTTTCCATGGTGATTTGCCAATTGTGCAAGCGTGTACCAGTTTCGATGAGGAGTGTGGCTTCATACGCAAGCAGATAGAATCGCTTATTGAATGTGGTGTGCCGTTGAAGAATATTTGTATTGTATCGCGAACGAACGCACTTCGTGACAACTACAAAAGCGCTTTTGAACAAGCTGGATTCGATTCTTACTCGCTCTCTTCAGAGAGTTCTGACAACGATAAACCAGGGCTTCGTTTTGCTACGATGCACCGAGTTAAAGGGCTCGAGTTTCAATATATTTTCATTGCAGGCGCAAACGAAGGTGTCATCCCATTGCAAATGGCTATTACCGAAGATCCTGTCGAAAAACGCGATTACGATTTCAACGAAAGAGCGCTATTACACGTTGCTGCAACAAGAGCAATAAAGGGTCTCGTCGTTACATCGTCAGGACAACTAAGCCCTTACTTGATTTAGTTATCTTTATAATTGCCCAGATATCAATTTGAGCTTGTTTAAAATTGTGC