Homologs in group_2227

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_17035 FBDBKF_17035 71.6 Morganella morganii S1 - DksA/TraR family C4-type zinc finger protein
EHELCC_16555 EHELCC_16555 71.6 Morganella morganii S2 - DksA/TraR family C4-type zinc finger protein
NLDBIP_16765 NLDBIP_16765 71.6 Morganella morganii S4 - DksA/TraR family C4-type zinc finger protein
LHKJJB_16705 LHKJJB_16705 71.6 Morganella morganii S3 - DksA/TraR family C4-type zinc finger protein
HKOGLL_17670 HKOGLL_17670 71.6 Morganella morganii S5 - DksA/TraR family C4-type zinc finger protein
F4V73_RS18515 F4V73_RS18515 72.7 Morganella psychrotolerans - DksA/TraR family C4-type zinc finger protein

Distribution of the homologs in the orthogroup group_2227

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2227

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P41039 1.02e-35 119 63 0 88 1 ybiI Uncharacterized protein YbiI Escherichia coli (strain K12)
P41059 2.57e-06 44 37 1 66 4 CP80 Uncharacterized 8.5 kDa protein in gpA 5'region Escherichia phage 186
P41065 0.000568 38 37 2 56 1 traR Protein TraR Escherichia coli (strain K12)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS11925
Feature type CDS
Gene -
Product DksA/TraR family C4-type zinc finger protein
Location 2635986 - 2636252 (strand: 1)
Length 267 (nucleotides) / 88 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_2227
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF01258 Prokaryotic dksA/traR C4-type zinc finger

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1734 Transcription (K) K RNA polymerase-binding transcription factor DksA

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K06204 RNA polymerase-binding transcription factor Biofilm formation - Escherichia coli -

Protein Sequence

MASGWANDSAVQEQIDATIDDAIARARNQMTQGESAEFCDECGEAIPLARQKAIRGVRYCINCQEAIDKKYNTFSGYNRRGSKDSQLR

Flanking regions ( +/- flanking 50bp)

CAGCATCCCAATATTAATTCCTATATTCACTGTATTAATAGGAGAATATGATGGCAAGTGGATGGGCAAATGATAGTGCTGTTCAAGAACAAATTGATGCCACTATTGATGATGCCATTGCAAGAGCGCGTAACCAAATGACTCAGGGAGAAAGTGCTGAGTTTTGTGATGAGTGTGGTGAAGCAATTCCATTAGCTCGGCAAAAAGCGATTCGAGGGGTTCGCTATTGTATTAACTGCCAAGAAGCGATAGATAAAAAATATAATACCTTTAGTGGCTATAATCGCCGTGGTAGTAAAGATAGCCAACTCAGATAATGAGCACACTTCTTATACAAAAAACTGTACCTTATGTAAGCTTACTCAAT