Homologs in group_2264

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_17035 FBDBKF_17035 88.6 Morganella morganii S1 - DksA/TraR family C4-type zinc finger protein
EHELCC_16555 EHELCC_16555 88.6 Morganella morganii S2 - DksA/TraR family C4-type zinc finger protein
NLDBIP_16765 NLDBIP_16765 88.6 Morganella morganii S4 - DksA/TraR family C4-type zinc finger protein
LHKJJB_16705 LHKJJB_16705 88.6 Morganella morganii S3 - DksA/TraR family C4-type zinc finger protein
HKOGLL_17670 HKOGLL_17670 88.6 Morganella morganii S5 - DksA/TraR family C4-type zinc finger protein
PMI_RS11925 PMI_RS11925 72.7 Proteus mirabilis HI4320 - DksA/TraR family C4-type zinc finger protein

Distribution of the homologs in the orthogroup group_2264

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2264

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P41039 1.96e-38 125 65 0 88 1 ybiI Uncharacterized protein YbiI Escherichia coli (strain K12)
P41065 1.4e-10 55 38 2 67 1 traR Protein TraR Escherichia coli (strain K12)
P41059 1.42e-10 55 48 1 66 4 CP80 Uncharacterized 8.5 kDa protein in gpA 5'region Escherichia phage 186

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS18515
Feature type CDS
Gene -
Product DksA/TraR family C4-type zinc finger protein
Location 40366 - 40632 (strand: 1)
Length 267 (nucleotides) / 88 (amino acids)
In genomic island -

Contig

Accession NZ_VXKB01000009
Length 74461 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2264
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF01258 Prokaryotic dksA/traR C4-type zinc finger

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1734 Transcription (K) K RNA polymerase-binding transcription factor DksA

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K06204 RNA polymerase-binding transcription factor Biofilm formation - Escherichia coli -

Protein Sequence

MASGWANDSAVQEQIDATLDDAVARVRSQLTHGESALFCEECGDAIPPARRQAIPGVQLCVTCQTESDKKQAAYSGYNRRGSKDSQLR

Flanking regions ( +/- flanking 50bp)

CTTTAAAGATACGCAACACGACTCAATACCGGACAGTAGCGGAGGTAATAATGGCAAGTGGCTGGGCAAATGATTCCGCAGTACAGGAACAAATTGATGCCACACTGGATGATGCCGTTGCGCGGGTGCGCAGCCAGTTAACACACGGAGAAAGTGCGCTGTTTTGTGAAGAGTGCGGTGATGCGATCCCGCCCGCAAGGCGGCAGGCAATCCCGGGTGTGCAGTTATGTGTGACCTGTCAGACGGAGTCTGATAAAAAGCAGGCGGCATACAGCGGATATAACCGCCGTGGCAGCAAAGACAGTCAGTTACGTTGAAAGTGCGCGGAACCGTATTATACCGCGCATAACTATTTTTTGTGCGGAAT