Homologs in group_238

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_01805 FBDBKF_01805 63.0 Morganella morganii S1 cydB cytochrome d ubiquinol oxidase subunit II
EHELCC_02275 EHELCC_02275 63.0 Morganella morganii S2 cydB cytochrome d ubiquinol oxidase subunit II
NLDBIP_01185 NLDBIP_01185 63.0 Morganella morganii S4 cydB cytochrome d ubiquinol oxidase subunit II
LHKJJB_00850 LHKJJB_00850 63.0 Morganella morganii S3 cydB cytochrome d ubiquinol oxidase subunit II
HKOGLL_00890 HKOGLL_00890 63.0 Morganella morganii S5 cydB cytochrome d ubiquinol oxidase subunit II
F4V73_RS04130 F4V73_RS04130 64.5 Morganella psychrotolerans cydB cytochrome d ubiquinol oxidase subunit II
PMI_RS06945 PMI_RS06945 61.8 Proteus mirabilis HI4320 cydB cytochrome d ubiquinol oxidase subunit II

Distribution of the homologs in the orthogroup group_238

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_238

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P26458 2.38e-39 145 31 9 369 1 appB Cytochrome bd-II ubiquinol oxidase subunit 2 Escherichia coli (strain K12)
P0ABK2 3.27e-37 140 27 9 369 1 cydB Cytochrome bd-I ubiquinol oxidase subunit 2 Escherichia coli (strain K12)
P0ABK3 3.27e-37 140 27 9 369 3 cydB Cytochrome bd-I ubiquinol oxidase subunit 2 Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0ABK4 3.27e-37 140 27 9 369 3 cydB Cytochrome bd-I ubiquinol oxidase subunit 2 Escherichia coli O157:H7
P45020 1.28e-35 135 28 9 361 3 HI_1075 Probable cytochrome oxidase subunit 2 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P94365 6.31e-25 106 25 10 339 3 cydB Cytochrome bd ubiquinol oxidase subunit 2 Bacillus subtilis (strain 168)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS11755
Feature type CDS
Gene cydB
Product cytochrome d ubiquinol oxidase subunit II
Location 2596822 - 2597829 (strand: -1)
Length 1008 (nucleotides) / 335 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_238
Orthogroup size 8
N. genomes 7

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Genomic region

Domains

PF02322 Cytochrome bd terminal oxidase subunit II

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1294 Energy production and conversion (C) C Cytochrome bd-type quinol oxidase, subunit 2

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K00426 cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7] Oxidative phosphorylation
Two-component system		 Cytochrome bd ubiquinol oxidase

Protein Sequence

MNIDFSMIWFAIIIFATLMYIIADGFDLGIGIILPFTRDKIQRDTMINSVAPVWDGNETWLVLGGAALYGAFPLAYAVIIDALTIPLTLMLIGLIFRGVAFEFRVNALPKHRLFWDSAFIGGSFLATFCQGITVGAVINGFNVTERHFSGSALDWLTPFPIFCGFALLVTYALLGSSWLIMKTEHQLHRKMCTITVYLAITLLVVIAIVSLWTPLTHADIAQRWFSLPNLYFLLPVPLLVLACAWGIVRSAYNYGHYQPFLLSLLLVLIGFAGLGISIFPYIIPPSISIWQAAAPVLSQQFMLVGAVIIIPVILAYTSWSYYVFRGKVNANESYH

Flanking regions ( +/- flanking 50bp)

AAAGGCCCTGTAGTGCTTAAATCCGACCAATTAACACAGGGTGAAAAATAATGAATATTGATTTTTCGATGATTTGGTTTGCGATCATTATTTTTGCCACACTTATGTATATTATTGCAGATGGATTTGATCTGGGGATTGGCATTATTTTGCCTTTTACCCGAGATAAAATACAAAGAGATACCATGATTAATAGTGTGGCACCAGTTTGGGACGGCAATGAAACATGGTTAGTATTAGGAGGGGCTGCGCTCTATGGTGCTTTTCCTCTTGCCTATGCAGTTATTATTGATGCGTTAACAATACCACTGACATTGATGCTTATTGGGCTTATTTTCCGTGGTGTGGCATTTGAATTTCGCGTTAACGCACTTCCTAAACATCGCCTATTTTGGGATTCAGCTTTTATTGGTGGCTCTTTTCTTGCTACCTTTTGCCAAGGGATCACAGTAGGTGCAGTTATTAATGGTTTTAATGTGACAGAGCGCCATTTCAGTGGCTCGGCATTGGATTGGTTAACACCATTCCCTATTTTCTGTGGTTTTGCTTTGTTAGTCACTTATGCATTGTTAGGCAGTTCATGGTTGATTATGAAAACAGAGCATCAACTGCATCGTAAAATGTGCACTATAACGGTGTATCTGGCTATTACATTGCTGGTGGTGATTGCAATAGTAAGCTTATGGACACCACTCACACATGCAGATATTGCACAACGCTGGTTTAGTTTACCTAATTTATATTTTTTATTACCTGTTCCGTTGCTCGTATTGGCTTGTGCTTGGGGCATTGTTCGTAGTGCCTATAATTATGGTCATTATCAGCCTTTTCTATTATCACTTTTATTGGTACTTATTGGTTTTGCAGGATTAGGGATCAGTATCTTTCCTTATATTATTCCACCTTCTATTTCGATTTGGCAGGCGGCAGCACCTGTTTTAAGTCAGCAATTTATGTTAGTTGGAGCGGTTATAATTATTCCTGTGATATTAGCCTATACCAGTTGGAGTTATTATGTATTTCGTGGAAAGGTAAATGCCAATGAAAGTTATCATTAGTCATTTTTTAACAATAAAACCAACGAAAAATAAAGCTCGTTGGTATCAAC