Homologs in group_154

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9 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_09015 FBDBKF_09015 29.4 Morganella morganii S1 fimA Pilin (type 1 fimbrial protein)
EHELCC_10395 EHELCC_10395 29.4 Morganella morganii S2 fimA Pilin (type 1 fimbrial protein)
NLDBIP_10740 NLDBIP_10740 29.4 Morganella morganii S4 fimA Pilin (type 1 fimbrial protein)
LHKJJB_10615 LHKJJB_10615 29.4 Morganella morganii S3 fimA Pilin (type 1 fimbrial protein)
HKOGLL_13675 HKOGLL_13675 29.4 Morganella morganii S5 fimA Pilin (type 1 fimbrial protein)
F4V73_RS10955 F4V73_RS10955 29.4 Morganella psychrotolerans - fimbrial protein
PMI_RS01255 PMI_RS01255 31.2 Proteus mirabilis HI4320 - fimbrial protein
PMI_RS01305 PMI_RS01305 30.9 Proteus mirabilis HI4320 - fimbrial protein
PMI_RS09285 PMI_RS09285 26.1 Proteus mirabilis HI4320 - fimbrial protein

Distribution of the homologs in the orthogroup group_154

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_154

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P42191 9.33e-37 128 40 2 163 1 prsK Protein PrsK Escherichia coli
P62532 3.48e-36 127 38 1 163 1 papK Fimbrial adapter PapK Escherichia coli
P62533 3.48e-36 127 38 1 163 3 papK Fimbrial adapter PapK Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
Q8X5K5 4.33e-09 56 29 7 163 2 lpfA Probable major fimbrial subunit LpfA Escherichia coli O157:H7
P53521 2.44e-08 54 25 5 178 3 pmfF Putative minor fimbrial subunit PmfF Proteus mirabilis (strain HI4320)
P43660 2.07e-07 52 30 8 187 3 lpfA Long polar fimbria protein A Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P77789 3.27e-06 48 25 6 167 3 ydeS Uncharacterized fimbrial-like protein YdeS Escherichia coli (strain K12)
Q03011 2e-05 46 27 6 162 1 mrpA Major MR/P fimbria protein Proteus mirabilis (strain HI4320)
P04740 4.57e-05 45 25 7 182 3 KS71A KS71A fimbrillin Escherichia coli
P04127 0.000302 43 22 8 189 1 papA Pap fimbrial major pilin protein Escherichia coli
P13421 0.000745 42 28 8 171 1 smfA Fimbria A protein Serratia marcescens

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS10930
Feature type CDS
Gene -
Product fimbrial protein
Location 2406933 - 2407499 (strand: -1)
Length 567 (nucleotides) / 188 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_154
Orthogroup size 10
N. genomes 7

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Genomic region

Domains

PF00419 Fimbrial protein

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3539 Cell motility (N) N Pilin (type 1 fimbrial protein)

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K12523 minor pilin subunit PapK - -

Protein Sequence

MVIYFYREWVKILFFMLIFLPVANAATTMNFDGTLIDTPCRIDQPSLNQNVVFLNSTPRDYWKYPAVRPAEKFTIKLIQCDAKSLWKSVKIKFNGQPEPEMGAEQQKYLTLSSGVNKSKLAIGLIDIDGNQRITLGENHNGGNGTQLNDGTMLLTFNAFVEATPKAIQEKSVVPGVYNATVEFEVSYE

Flanking regions ( +/- flanking 50bp)

TAAATATATTAACTCTTAAATTGCAGTATAATTAATTTAAGGTAGATCATATGGTTATTTATTTTTATAGAGAATGGGTAAAAATATTATTTTTTATGCTTATTTTTTTACCTGTTGCAAATGCGGCTACAACAATGAATTTTGATGGTACTTTGATTGATACGCCATGTAGAATTGATCAGCCAAGTTTAAATCAAAATGTGGTTTTTTTAAATAGCACACCAAGGGATTATTGGAAATATCCTGCGGTTAGACCTGCAGAAAAATTTACCATTAAACTGATCCAGTGTGATGCAAAATCGTTATGGAAATCAGTGAAAATTAAATTTAATGGGCAGCCAGAGCCAGAGATGGGGGCTGAACAACAAAAGTACCTTACACTTTCATCTGGCGTTAATAAAAGTAAGTTAGCCATTGGATTAATTGATATAGATGGAAACCAACGTATTACTTTAGGTGAAAACCATAACGGTGGAAATGGAACTCAACTTAACGATGGCACGATGTTGCTGACCTTTAATGCATTTGTTGAAGCGACACCAAAAGCAATACAGGAAAAAAGTGTTGTACCTGGAGTTTATAATGCCACGGTAGAATTTGAGGTTTCTTATGAATAAAAGTAAATATTTTATACTGCCTATTTTTTTATATTTACTATCAGGAACTG