Homologs in group_137

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10 homologs were identified in 1 genome with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
PMI_RS07950 PMI_RS07950 63.9 Proteus mirabilis HI4320 - fimbrial protein
PMI_RS08885 PMI_RS08885 56.8 Proteus mirabilis HI4320 - fimbrial protein
PMI_RS09470 PMI_RS09470 63.0 Proteus mirabilis HI4320 - fimbrial protein
PMI_RS09480 PMI_RS09480 62.3 Proteus mirabilis HI4320 - DUF1120 domain-containing protein
PMI_RS09490 PMI_RS09490 65.4 Proteus mirabilis HI4320 - hypothetical protein
PMI_RS09505 PMI_RS09505 46.7 Proteus mirabilis HI4320 - DUF1120 domain-containing protein
PMI_RS15290 PMI_RS15290 18.4 Proteus mirabilis HI4320 - hypothetical protein
PMI_RS15295 PMI_RS15295 34.6 Proteus mirabilis HI4320 - hypothetical protein
PMI_RS15300 PMI_RS15300 33.0 Proteus mirabilis HI4320 - fimbrial protein
PMI_RS15305 PMI_RS15305 34.6 Proteus mirabilis HI4320 - DUF1120 domain-containing protein

Distribution of the homologs in the orthogroup group_137

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_137

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS10610
Feature type CDS
Gene -
Product fimbrial protein
Location 2334312 - 2335022 (strand: 1)
Length 711 (nucleotides) / 236 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_137
Orthogroup size 11
N. genomes 1

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Genomic region

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3539 Cell motility (N) N Pilin (type 1 fimbrial protein)

Protein Sequence

MKKTLLSLVMLTVISTPVLAKTPIANLKINGDIKPPTCTINGATQSDVIFDLGKISPSLIPKSSNYIYPHNTTSTNVTIECDANTYLTFKATDTYVNSQLDLDQTSKTKASGIFHLVNKDQVDTSVGGILFVWYNVTVDGKPAFISRANDATVGFSDNKTVIVKEVTNGWTTKQQENVDKNSLDLMPGQIFSTSISAGKASSAFILSKDSLNKKGIDISNGLDFIGEAVLTFNFGV

Flanking regions ( +/- flanking 50bp)

TATCATATGTATATTAGTTTGTTGTCTACTTTATAAAAAGGAATAATTATATGAAAAAAACATTACTCAGTCTTGTTATGCTGACTGTAATATCAACGCCAGTATTGGCTAAAACGCCTATCGCTAATTTGAAAATCAATGGTGATATCAAACCACCAACTTGTACTATTAATGGCGCAACACAAAGTGATGTTATTTTTGATTTAGGTAAAATTAGTCCATCGTTGATCCCTAAATCATCAAATTATATATATCCTCATAATACAACCTCGACTAACGTCACTATTGAATGCGATGCAAACACTTATCTTACATTTAAAGCCACTGATACTTATGTAAACAGTCAGCTTGATCTTGATCAAACCAGTAAAACTAAAGCTAGTGGGATATTTCACCTGGTTAATAAAGACCAGGTAGACACTTCCGTGGGGGGAATACTATTCGTTTGGTACAATGTGACTGTAGACGGAAAACCCGCATTTATTAGCCGGGCAAATGATGCAACGGTAGGTTTTTCAGATAATAAAACTGTTATAGTTAAAGAAGTCACTAATGGTTGGACGACAAAACAACAAGAAAATGTAGATAAAAATAGTTTAGATTTAATGCCAGGTCAGATTTTTTCTACCAGCATTTCAGCAGGGAAAGCATCTTCTGCATTTATTTTATCTAAAGATTCATTAAATAAAAAAGGTATAGATATTTCTAACGGATTAGATTTTATCGGCGAGGCTGTTCTCACTTTTAACTTTGGTGTCTAATTTTTAGAATAATTGATAATCACAATATAAAGATTTATTATATTGCGATT