Homologs in group_901

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_04755 FBDBKF_04755 51.6 Morganella morganii S1 agaV PTS N-acetylgalactosamine transporter subunit IIB
EHELCC_06045 EHELCC_06045 51.6 Morganella morganii S2 agaV PTS N-acetylgalactosamine transporter subunit IIB
NLDBIP_06365 NLDBIP_06365 51.6 Morganella morganii S4 agaV PTS N-acetylgalactosamine transporter subunit IIB
LHKJJB_03245 LHKJJB_03245 51.6 Morganella morganii S3 agaV PTS N-acetylgalactosamine transporter subunit IIB
HKOGLL_06720 HKOGLL_06720 51.6 Morganella morganii S5 agaV PTS N-acetylgalactosamine transporter subunit IIB
F4V73_RS09225 F4V73_RS09225 49.7 Morganella psychrotolerans agaV PTS N-acetylgalactosamine transporter subunit IIB

Distribution of the homologs in the orthogroup group_901

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_901

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P42904 4.88e-49 158 50 1 158 4 agaV N-acetylgalactosamine-specific phosphotransferase enzyme IIB component 2 Escherichia coli (strain K12)
P42909 3.38e-40 135 45 2 151 4 agaB N-acetylgalactosamine-specific phosphotransferase enzyme IIB component 1 Escherichia coli (strain K12)
P26380 3.3e-25 97 35 2 160 1 levE PTS system fructose-specific EIIB component Bacillus subtilis (strain 168)
P69800 2.45e-24 99 36 3 157 3 manX PTS system mannose-specific EIIAB component Shigella flexneri
P69797 2.45e-24 99 36 3 157 1 manX PTS system mannose-specific EIIAB component Escherichia coli (strain K12)
P69798 2.45e-24 99 36 3 157 3 manX PTS system mannose-specific EIIAB component Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P69799 2.45e-24 99 36 3 157 3 manX PTS system mannose-specific EIIAB component Escherichia coli O157:H7
Q9RGG4 3.18e-23 92 32 2 155 1 sorB PTS system sorbose-specific EIIB component Lacticaseibacillus casei
P37081 7.27e-21 86 32 2 155 1 sorB PTS system sorbose-specific EIIB component Klebsiella pneumoniae
Q5XAF5 1.15e-17 81 31 3 159 1 manX PTS system mannose-specific EIIAB component Streptococcus pyogenes serotype M6 (strain ATCC BAA-946 / MGAS10394)
Q5XCC7 2.43e-09 56 26 5 142 1 M6_Spy0801 Probable phosphotransferase enzyme IIB component M6_Spy0801 Streptococcus pyogenes serotype M6 (strain ATCC BAA-946 / MGAS10394)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS10535
Feature type CDS
Gene agaV
Product PTS N-acetylgalactosamine transporter subunit IIB
Location 2317122 - 2317616 (strand: -1)
Length 495 (nucleotides) / 164 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_901
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF03830 PTS system sorbose subfamily IIB component

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3444 Carbohydrate transport and metabolism (G) G Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K02745 N-acetylgalactosamine PTS system EIIB component [EC:2.7.1.-] Galactose metabolism
Metabolic pathways
Phosphotransferase system (PTS)		 -

Protein Sequence

MNTPNIVWTRIDERLLHGQIRITWGKHTEANLILVANDDAAEGPNAAFMQAGMKASAGGEYAVRFFSIQKTIDVISKASPRQKIFVLCNNPTDVARLVEGGVPITHCNVGNMHFHEGKRQIAKTVSIDEKDLSAFKRLIEKGVTCTVQNTPDQTPVDVLTLASA

Flanking regions ( +/- flanking 50bp)

AAGACACACAGTCTGCTTTAAATTAATAAAATATAATAAGAGAGCTAGTTATGAACACACCTAATATTGTCTGGACCCGCATTGATGAACGTTTACTTCATGGACAAATCCGCATTACATGGGGTAAACATACGGAAGCAAACCTAATTTTAGTCGCTAATGATGATGCTGCTGAAGGTCCCAATGCTGCATTTATGCAGGCGGGAATGAAAGCATCTGCTGGCGGCGAATATGCGGTTCGCTTTTTCTCTATTCAAAAAACTATTGATGTTATTAGCAAAGCATCTCCTCGTCAGAAAATTTTTGTTCTGTGTAATAACCCAACTGATGTAGCCCGTTTAGTTGAAGGTGGCGTGCCTATTACTCATTGTAATGTTGGCAATATGCATTTTCATGAAGGTAAACGTCAAATTGCGAAAACAGTCTCTATCGATGAAAAAGATCTTAGTGCTTTTAAGCGTCTTATCGAAAAAGGGGTTACTTGCACAGTCCAAAACACACCAGATCAAACTCCTGTTGATGTACTAACACTCGCATCAGCCTGATTATTTCCTGATCAAGAAAACCTGCTATAGGCAGGTTTGAGGATAATTTA