Homologs in group_873

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_04430 FBDBKF_04430 59.4 Morganella morganii S1 sgrR HTH-type transcriptional regulator SgrR
EHELCC_05720 EHELCC_05720 59.4 Morganella morganii S2 sgrR HTH-type transcriptional regulator SgrR
NLDBIP_06040 NLDBIP_06040 59.4 Morganella morganii S4 sgrR HTH-type transcriptional regulator SgrR
LHKJJB_02920 LHKJJB_02920 59.4 Morganella morganii S3 sgrR HTH-type transcriptional regulator SgrR
HKOGLL_06395 HKOGLL_06395 59.4 Morganella morganii S5 sgrR HTH-type transcriptional regulator SgrR
F4V73_RS08875 F4V73_RS08875 58.7 Morganella psychrotolerans sgrR HTH-type transcriptional regulator SgrR

Distribution of the homologs in the orthogroup group_873

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_873

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q7N125 0.0 747 61 1 551 3 sgrR HTH-type transcriptional regulator SgrR Photorhabdus laumondii subsp. laumondii (strain DSM 15139 / CIP 105565 / TT01)
A1JJG7 0.0 669 56 1 551 3 sgrR HTH-type transcriptional regulator SgrR Yersinia enterocolitica serotype O:8 / biotype 1B (strain NCTC 13174 / 8081)
A4TQA7 0.0 661 55 1 551 3 sgrR HTH-type transcriptional regulator SgrR Yersinia pestis (strain Pestoides F)
Q1CMQ0 0.0 661 55 1 551 3 sgrR HTH-type transcriptional regulator SgrR Yersinia pestis bv. Antiqua (strain Nepal516)
Q74Q56 0.0 661 55 1 551 3 sgrR HTH-type transcriptional regulator SgrR Yersinia pestis
Q1C1Y8 0.0 661 55 1 551 3 sgrR HTH-type transcriptional regulator SgrR Yersinia pestis bv. Antiqua (strain Antiqua)
Q66EM6 0.0 659 55 1 551 3 sgrR HTH-type transcriptional regulator SgrR Yersinia pseudotuberculosis serotype I (strain IP32953)
Q6D0F8 0.0 637 54 2 551 3 sgrR HTH-type transcriptional regulator SgrR Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672)
Q8Z9I4 0.0 601 51 2 551 3 sgrR HTH-type transcriptional regulator SgrR Salmonella typhi
Q5PDG5 0.0 601 51 2 551 3 sgrR HTH-type transcriptional regulator SgrR Salmonella paratyphi A (strain ATCC 9150 / SARB42)
Q8ZRV0 0.0 598 51 2 551 3 sgrR HTH-type transcriptional regulator SgrR Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P33595 0.0 598 50 3 551 1 sgrR HTH-type transcriptional regulator SgrR Escherichia coli (strain K12)
Q57TF2 0.0 597 51 2 551 3 sgrR HTH-type transcriptional regulator SgrR Salmonella choleraesuis (strain SC-B67)
Q1RGC7 0.0 597 50 3 551 3 sgrR HTH-type transcriptional regulator SgrR Escherichia coli (strain UTI89 / UPEC)
Q8FL80 0.0 597 50 3 551 3 sgrR HTH-type transcriptional regulator SgrR Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
A1A7B8 0.0 597 50 3 551 3 sgrR HTH-type transcriptional regulator SgrR Escherichia coli O1:K1 / APEC
Q0TLR9 0.0 596 50 3 551 3 sgrR HTH-type transcriptional regulator SgrR Escherichia coli O6:K15:H31 (strain 536 / UPEC)
Q3Z5U2 0.0 594 50 3 551 3 sgrR HTH-type transcriptional regulator SgrR Shigella sonnei (strain Ss046)
Q8XA02 0.0 594 50 3 551 3 sgrR HTH-type transcriptional regulator SgrR Escherichia coli O157:H7
Q83SP3 0.0 593 50 3 551 3 sgrR HTH-type transcriptional regulator SgrR Shigella flexneri
Q0T8C8 0.0 593 50 3 551 3 sgrR HTH-type transcriptional regulator SgrR Shigella flexneri serotype 5b (strain 8401)
Q326G6 0.0 593 50 3 551 3 sgrR HTH-type transcriptional regulator SgrR Shigella boydii serotype 4 (strain Sb227)
Q32K24 0.0 589 50 3 551 3 sgrR HTH-type transcriptional regulator SgrR Shigella dysenteriae serotype 1 (strain Sd197)
P46890 1.81e-38 152 25 16 580 4 ybaE Uncharacterized protein YbaE Escherichia coli (strain K12)
O07570 2.68e-35 143 23 16 582 3 yhjP Uncharacterized protein YhjP Bacillus subtilis (strain 168)
P23847 4.04e-06 53 24 6 190 1 dppA Dipeptide-binding protein Escherichia coli (strain K12)
P33950 0.000227 47 23 5 191 1 hbpA Heme-binding protein A Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P45285 0.000582 46 23 5 180 3 sapA Peptide transport periplasmic protein SapA Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS10285
Feature type CDS
Gene sgrR
Product HTH-type transcriptional regulator SgrR
Location 2255359 - 2257038 (strand: 1)
Length 1680 (nucleotides) / 559 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_873
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle
PF12793 Sugar transport-related sRNA regulator N-term

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG4533 Transcription (K) K DNA-binding transcriptional regulator SgrR of sgrS sRNA, contains a MarR-type HTH domain and a periplasmic-type solute-binding domain

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K11925 SgrR family transcriptional regulator - -

Protein Sequence

MTSPRLELQFIRLWQAFEGKETETTLQELAETLHCTRRHVRSLLNKMHQTGWIDWQAEVGRGKKSTLTFHSNAFDIQQSRAERLLEENDIEKLVALMGDKDSLRQMVLSQIEKSFHPSQQRLRIIYYRPFRNLLPGTPLRRSELHLMSQIFNSLLHLKEENGEVEAELAHHWQMISEQHWRFYLRPAIYFHHGRELTIEDISTSLMRMKVCNPLYAHIEKITSPQPYVIDIYLTVPDKQFATLLGSPQAAILPQEWRTLANFSQHPIGTGAYQVMSNDQHKLQIKAFDRYFGLRALLDNIDIWVVPELKDKMVCSTLHLTDDDTHNNSLESRKEEGCYFLLYDSRSTQCQQPEIREWLSSVLTPVNMLAHCAPSYQRHWSPAYGLLLHWHHSKLIPPHTKPASLTKLTITLYKEHHEYSTIAELIKKILSDYDIELSIQVLDYEQWYYGDAKSDIWLATVNFYKPLEFSIFAALYELPLFHQCMGERYEDALALWRQKVLPLEEWCRQLTQNNWLFPLFHHLLELQGQRTIRGVKMNTFGWFDFKSAWFIPDLETPPLK

Flanking regions ( +/- flanking 50bp)

TAATATAAGGAAATTAAAATTGATCACTTTAATAAGGGATTTCCTCTTTTATGACATCACCCCGCTTAGAGTTGCAATTTATTCGCTTATGGCAAGCTTTTGAGGGAAAAGAGACTGAAACCACATTACAAGAGCTTGCTGAAACATTACATTGCACTCGTCGCCATGTGCGTTCGTTACTAAACAAAATGCATCAAACTGGTTGGATAGATTGGCAAGCAGAAGTAGGAAGAGGAAAAAAATCCACCCTGACTTTTCATTCTAACGCCTTTGACATCCAACAAAGCCGAGCAGAGCGATTACTGGAAGAAAATGATATAGAAAAGCTCGTTGCACTGATGGGCGATAAAGACTCGTTACGGCAAATGGTGCTTTCACAGATTGAAAAAAGCTTTCACCCTAGCCAACAACGTCTACGAATAATTTACTATCGCCCTTTTCGTAATTTATTACCCGGTACGCCGCTTCGGCGCTCTGAATTACATTTAATGAGCCAAATATTTAATTCATTACTTCACTTAAAAGAGGAAAATGGGGAAGTCGAAGCGGAATTAGCCCATCACTGGCAGATGATCAGCGAGCAACATTGGCGCTTTTATTTACGCCCTGCTATCTATTTTCACCATGGACGAGAATTAACCATAGAGGATATCAGCACCTCTTTAATGAGAATGAAAGTCTGCAATCCACTTTATGCACATATTGAGAAAATAACCTCACCGCAACCTTATGTTATTGATATTTATTTAACCGTACCGGATAAACAATTTGCCACCCTATTAGGTAGCCCACAAGCAGCGATCTTACCCCAAGAATGGCGAACTCTCGCTAATTTTTCTCAGCACCCCATTGGCACAGGGGCATACCAAGTGATGAGCAATGATCAACATAAACTGCAAATCAAAGCGTTTGATCGCTATTTTGGTTTACGCGCACTATTAGATAACATCGATATTTGGGTGGTTCCTGAATTAAAAGACAAAATGGTTTGCTCTACCCTTCATTTAACCGATGATGATACTCATAACAACTCACTGGAAAGCCGCAAAGAGGAAGGCTGTTATTTTTTACTTTACGATAGCCGCTCAACACAATGCCAACAACCTGAGATCCGCGAATGGCTTAGTAGTGTATTAACACCGGTGAATATGTTGGCCCATTGTGCGCCCTCTTATCAACGCCATTGGTCACCTGCTTATGGTTTATTGTTACACTGGCACCATAGCAAACTGATCCCACCGCATACTAAACCCGCTTCACTCACAAAACTGACCATTACACTGTATAAAGAGCACCACGAATACAGCACTATTGCTGAACTGATCAAAAAAATCTTATCTGACTATGATATCGAATTATCTATTCAAGTGCTTGATTATGAACAGTGGTATTATGGTGATGCAAAGAGTGATATCTGGTTAGCTACCGTCAATTTCTATAAACCGCTCGAGTTTTCTATTTTTGCAGCACTTTATGAACTGCCCCTATTTCACCAGTGCATGGGTGAACGTTATGAAGATGCCCTAGCCTTATGGCGTCAAAAAGTATTACCGCTTGAAGAGTGGTGTCGCCAATTAACACAAAATAATTGGCTTTTCCCGTTATTTCACCATTTACTTGAATTACAAGGGCAACGTACGATACGCGGTGTAAAAATGAATACCTTTGGTTGGTTTGATTTTAAATCGGCATGGTTTATACCTGATTTAGAAACGCCCCCATTAAAATAGCGTTTTCACTTATAACTATGTTAATTCACAGAAACCCGCAAAGTTATAAA