Homologs in group_4493

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0 homologs were identified in 0 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product

Distribution of the homologs in the orthogroup group_4493

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_4493

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P31340 1.18e-75 229 56 2 207 1 V Spike protein Escherichia phage P2

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS09770
Feature type CDS
Gene -
Product phage baseplate assembly protein V
Location 2128536 - 2129162 (strand: -1)
Length 627 (nucleotides) / 208 (amino acids)
In genomic island GI58

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_4493
Orthogroup size 1
N. genomes 1

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Genomic region

Domains

PF04717 Type VI secretion system/phage-baseplate injector OB domain
PF18715 Phage spike trimer
PF18946 GpV Apex motif

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG4540 Mobilome: prophages, transposons (X) X Phage P2 baseplate assembly protein gpV

Protein Sequence

MNIAELIRKIQNLIRTGVVIDVSAEKGCRVKTGDNETDWRPWLTARAGNSRSWWAPNVGEQVLLLSIGGDLTTSFVLPAIFSDDFSEPSTSLTAHRHEYKDGAVIEYEPATGALTVTGIKTAVIEARESVKVTSPDITCVATSKITLDTPTVICTNNLTTGSLTVQKGGTMTGDITHVGGKMSSNGVVVSTHTHSGVRTGDGNTGQPQ

Flanking regions ( +/- flanking 50bp)

AACAATCCCAATCCCGTGCGTTTTTTTATTTCCCGTTGCACATTGCGGGTATGAATATCGCAGAGCTTATCCGAAAAATACAAAACTTGATCCGTACTGGCGTTGTGATTGATGTCAGTGCGGAAAAAGGGTGTCGAGTTAAAACGGGCGACAATGAAACCGACTGGCGCCCGTGGCTGACTGCACGTGCTGGTAACTCGCGCTCATGGTGGGCGCCCAATGTTGGCGAACAAGTGTTATTGCTATCAATCGGTGGCGATTTAACTACCTCGTTTGTGTTGCCGGCGATATTTAGTGATGATTTTTCAGAGCCGTCAACCTCATTAACCGCGCATCGTCATGAGTATAAAGACGGGGCAGTAATTGAATATGAGCCGGCAACAGGGGCGCTAACCGTTACGGGAATTAAAACTGCCGTGATTGAAGCCCGCGAGTCGGTCAAAGTCACGTCACCTGACATTACGTGTGTCGCGACAAGCAAAATCACCTTAGATACCCCTACCGTTATTTGTACCAACAACTTAACTACGGGATCACTGACGGTGCAAAAAGGCGGCACTATGACCGGTGATATTACCCATGTTGGTGGGAAAATGTCCTCTAATGGCGTGGTGGTTTCAACCCATACCCACAGTGGTGTGCGTACCGGTGATGGTAATACGGGGCAACCGCAATGAACTATCTCGGCATGAATGCACAAACCGGTGAACATATTACCGATATTGAG