COG4540


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG4540, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 4 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Phage P2 baseplate assembly protein gpV
Function(s) descr. Mobilome: prophages, transposons (X)

Occurence in the database

COG4540 is associated with 4 different proteins (see tab "Protein list" and "Profile")
The 4 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_203 FBDBKF_12710 53633 54325 -1 Phage-related protein Morganella morganii S1
1 group_203 F4V73_RS06050 1282198 1282890 -1 Gp138 family membrane-puncturing spike protein Morganella psychrotolerans
2 group_203 PMI_RS08390 1831732 1832424 -1 Gp138 family membrane-puncturing spike protein Proteus mirabilis HI4320
3 group_203 PMI_RS09770 2128536 2129162 -1 phage baseplate assembly protein V Proteus mirabilis HI4320