Homologs in group_2512

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5 homologs were identified in 5 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_02130 FBDBKF_02130 40.8 Morganella morganii S1 - Nucleoside transport protein
EHELCC_02600 EHELCC_02600 40.8 Morganella morganii S2 - Nucleoside transport protein
NLDBIP_00860 NLDBIP_00860 40.8 Morganella morganii S4 - Nucleoside transport protein
LHKJJB_01175 LHKJJB_01175 40.8 Morganella morganii S3 - Nucleoside transport protein
HKOGLL_01215 HKOGLL_01215 40.8 Morganella morganii S5 - Nucleoside transport protein

Distribution of the homologs in the orthogroup group_2512

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2512

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0AFF2 0.0 604 74 2 398 1 nupC Nucleoside permease NupC Escherichia coli (strain K12)
P0AFF3 0.0 604 74 2 398 3 nupC Nucleoside permease NupC Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P39141 8.87e-163 465 63 0 385 2 nupC Nucleoside permease NupC Bacillus subtilis (strain 168)
P42312 2.68e-71 231 35 3 387 1 nupG Purine nucleoside transport protein NupG Bacillus subtilis (strain 168)
O32115 2.49e-61 206 34 5 396 3 yutK Uncharacterized transporter YutK Bacillus subtilis (strain 168)
P44742 3.96e-47 169 29 7 411 3 HI_0519 Uncharacterized transporter HI_0519 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P33024 7.9e-45 163 30 6 412 1 psuT Putative pseudouridine transporter Escherichia coli (strain K12)
P33021 5.52e-44 160 29 7 414 1 nupX Putative nucleoside permease NupX Escherichia coli (strain K12)
O25792 2.06e-41 154 27 7 409 3 nupC Nucleoside permease NupC Helicobacter pylori (strain ATCC 700392 / 26695)
Q9UA35 5.65e-25 110 23 6 401 2 SLC28A3 Solute carrier family 28 member 3 Eptatretus stoutii
O00337 2.06e-24 108 27 13 401 1 SLC28A1 Sodium/nucleoside cotransporter 1 Homo sapiens
E9PXX9 2.71e-24 108 25 10 406 2 Slc28a1 Sodium/nucleoside cotransporter 1 Mus musculus
O62667 3.29e-24 108 25 12 409 2 SLC28A1 Sodium/nucleoside cotransporter 1 Sus scrofa
Q62674 4.05e-24 107 26 9 405 1 Slc28a1 Sodium/nucleoside cotransporter 1 Rattus norvegicus
Q9ERH8 1.46e-23 106 24 7 352 2 Slc28a3 Solute carrier family 28 member 3 Mus musculus
Q8VIH3 7.3e-23 104 24 8 352 2 Slc28a3 Solute carrier family 28 member 3 Rattus norvegicus
Q9HAS3 2.22e-20 96 24 9 353 1 SLC28A3 Solute carrier family 28 member 3 Homo sapiens
Q9MZT2 4.6e-19 92 22 9 402 2 SLC28A1 Sodium/nucleoside cotransporter 1 Oryctolagus cuniculus
O43868 7.6e-19 92 22 7 401 1 SLC28A2 Sodium/nucleoside cotransporter 2 Homo sapiens
O88627 5.22e-18 89 24 9 354 1 Slc28a2 Sodium/nucleoside cotransporter 2 Mus musculus
Q62773 1.37e-17 88 24 9 354 1 Slc28a2 Sodium/nucleoside cotransporter 2 Rattus norvegicus

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS08990
Feature type CDS
Gene -
Product NupC/NupG family nucleoside CNT transporter
Location 1958663 - 1959847 (strand: -1)
Length 1185 (nucleotides) / 394 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_2512
Orthogroup size 6
N. genomes 6

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Genomic region

Domains

PF01773 Na+ dependent nucleoside transporter N-terminus
PF07662 Na+ dependent nucleoside transporter C-terminus
PF07670 Nucleoside recognition

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1972 Nucleotide transport and metabolism (F) F Nucleoside permease NupC

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K11535 nucleoside transport protein - -

Protein Sequence

MSSIIHFVLALAVIGALAFIASNNRKGIRLRYIVQLLIIEIALAWFFLNSDIGEGFVRGFAGLFDHLLGYAAQGTEFVFGGMMKGGLAFFFLNVLCPIIFISALIGILQHIKVLPFVIRIIGTVLSKVNGMGKLESFNAVSSLVLGQSENFIAYKDVLGKMSQRRMYTMAATAMSTVSMSIVGAYMTMLDPKYVVAALVLNMFSTFVILSVINPYSVENEEDIQMGNLHEGQSFFEMLGEYILAGFKVALIVAAMLIGFIALIAAVNAIFSMIFGISFQDCLGYVFYPLAWVIGIPEQDALRVGSVMATKLVSNEFVAMGSLQDLAAELTPRSVGILSVFLVSFANFSSIGIVAGAIKGLNEMQGNVVSRFGLKLLFGSTLVSFLSAAITGLFV

Flanking regions ( +/- flanking 50bp)

CGCGTTACATAAAATGCTCTCCAAGATTTATTTTTATTTTTGGAGCATGCATGTCTTCTATCATTCACTTTGTTTTGGCTCTCGCAGTTATTGGTGCATTAGCATTTATTGCAAGTAATAACCGCAAAGGGATCCGTCTGCGTTATATTGTGCAGTTATTAATTATTGAAATCGCATTGGCATGGTTCTTCCTCAATTCTGATATTGGTGAAGGCTTTGTCCGTGGTTTCGCTGGGCTATTTGATCACTTATTAGGTTATGCCGCACAAGGTACTGAGTTCGTCTTCGGTGGTATGATGAAAGGTGGTCTAGCATTCTTCTTCTTGAATGTATTATGTCCTATCATCTTTATTTCTGCATTAATTGGTATTTTGCAACATATCAAAGTATTGCCTTTCGTGATCCGCATTATCGGTACAGTGCTGTCCAAAGTGAACGGTATGGGGAAACTAGAATCGTTTAATGCGGTTAGCTCCTTAGTACTTGGCCAATCTGAGAACTTTATCGCTTATAAAGATGTATTGGGCAAAATGTCTCAGCGCCGTATGTACACTATGGCGGCGACAGCGATGTCTACGGTATCAATGTCAATTGTTGGTGCTTATATGACTATGCTTGATCCTAAATACGTTGTTGCTGCACTGGTTCTGAATATGTTCAGTACTTTCGTTATCCTATCAGTGATTAACCCATATTCTGTTGAAAATGAAGAAGATATCCAGATGGGGAATCTGCATGAAGGTCAAAGCTTCTTCGAAATGTTAGGTGAATATATCTTAGCTGGTTTCAAAGTTGCTTTAATCGTTGCGGCAATGTTGATTGGTTTTATCGCATTAATTGCTGCGGTAAACGCTATCTTTAGTATGATTTTCGGTATTAGTTTCCAAGATTGCTTAGGTTATGTGTTCTATCCATTAGCATGGGTGATTGGTATACCTGAGCAAGATGCATTACGTGTAGGTAGTGTGATGGCAACTAAATTAGTCTCTAATGAATTCGTCGCGATGGGAAGCTTGCAAGATCTGGCTGCTGAATTAACACCTCGCTCTGTTGGGATCTTATCTGTCTTCTTAGTCTCATTTGCTAACTTCTCTTCTATCGGTATTGTTGCAGGGGCTATTAAAGGTCTGAACGAAATGCAAGGTAATGTGGTTTCTCGTTTTGGTCTTAAATTACTATTTGGTTCTACGCTAGTTAGCTTCTTATCTGCTGCTATCACAGGCCTGTTTGTTTAATCATTGAGATAAGACAGATAGCATGTGAAATAAATAACAATGTAAGATGG