Homologs in group_1919

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_14280 FBDBKF_14280 58.8 Morganella morganii S1 araC AraC-type DNA-binding domain and AraC-containing proteins
EHELCC_08000 EHELCC_08000 58.8 Morganella morganii S2 araC AraC-type DNA-binding domain and AraC-containing proteins
NLDBIP_08325 NLDBIP_08325 58.8 Morganella morganii S4 araC AraC-type DNA-binding domain and AraC-containing proteins
LHKJJB_05940 LHKJJB_05940 58.8 Morganella morganii S3 araC AraC-type DNA-binding domain and AraC-containing proteins
HKOGLL_04975 HKOGLL_04975 58.8 Morganella morganii S5 araC AraC-type DNA-binding domain and AraC-containing proteins
F4V73_RS02630 F4V73_RS02630 59.0 Morganella psychrotolerans - helix-turn-helix transcriptional regulator

Distribution of the homologs in the orthogroup group_1919

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1919

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P76241 1.89e-27 109 30 1 221 2 nimR HTH-type transcriptional regulator NimR Escherichia coli (strain K12)
Q8FQS2 9.76e-14 73 46 0 93 3 ripA HTH-type transcriptional regulator RipA Corynebacterium efficiens (strain DSM 44549 / YS-314 / AJ 12310 / JCM 11189 / NBRC 100395)
Q8NRR3 2.83e-12 68 37 3 123 2 ripA HTH-type transcriptional regulator RipA Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / JCM 1318 / BCRC 11384 / CCUG 27702 / LMG 3730 / NBRC 12168 / NCIMB 10025 / NRRL B-2784 / 534)
B1JNC4 1.21e-08 58 29 3 134 3 rhaR HTH-type transcriptional activator RhaR Yersinia pseudotuberculosis serotype O:3 (strain YPIII)
A4TRS7 1.42e-08 57 29 3 134 3 rhaR HTH-type transcriptional activator RhaR Yersinia pestis (strain Pestoides F)
Q1CEB6 1.42e-08 57 29 3 134 3 rhaR HTH-type transcriptional activator RhaR Yersinia pestis bv. Antiqua (strain Nepal516)
A9QYR6 1.42e-08 57 29 3 134 3 rhaR HTH-type transcriptional activator RhaR Yersinia pestis bv. Antiqua (strain Angola)
Q8ZIZ9 1.42e-08 57 29 3 134 3 rhaR HTH-type transcriptional activator RhaR Yersinia pestis
B2K1W6 1.42e-08 57 29 3 134 3 rhaR HTH-type transcriptional activator RhaR Yersinia pseudotuberculosis serotype IB (strain PB1/+)
Q1C0W2 1.42e-08 57 29 3 134 3 rhaR HTH-type transcriptional activator RhaR Yersinia pestis bv. Antiqua (strain Antiqua)
Q66FF1 1.43e-08 57 29 3 134 3 rhaR HTH-type transcriptional activator RhaR Yersinia pseudotuberculosis serotype I (strain IP32953)
A7FN79 1.43e-08 57 29 3 134 3 rhaR HTH-type transcriptional activator RhaR Yersinia pseudotuberculosis serotype O:1b (strain IP 31758)
B5FPP6 1.67e-08 57 25 3 133 3 rhaR HTH-type transcriptional activator RhaR Salmonella dublin (strain CT_02021853)
Q6NI56 2.52e-08 57 38 0 85 3 ripA HTH-type transcriptional regulator RipA Corynebacterium diphtheriae (strain ATCC 700971 / NCTC 13129 / Biotype gravis)
Q57HG7 5.51e-08 56 26 3 133 3 rhaR HTH-type transcriptional activator RhaR Salmonella choleraesuis (strain SC-B67)
Q8Z2V5 5.61e-08 56 26 3 133 3 rhaR HTH-type transcriptional activator RhaR Salmonella typhi
B4TBY4 5.61e-08 56 26 3 133 3 rhaR HTH-type transcriptional activator RhaR Salmonella heidelberg (strain SL476)
B4TPR0 6.71e-08 55 25 3 133 3 rhaR HTH-type transcriptional activator RhaR Salmonella schwarzengrund (strain CVM19633)
B5F0N0 8.02e-08 55 25 3 133 3 rhaR HTH-type transcriptional activator RhaR Salmonella agona (strain SL483)
A9MI63 8.17e-08 55 25 3 133 3 rhaR HTH-type transcriptional activator RhaR Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980)
P40865 8.32e-08 55 25 3 133 3 rhaR HTH-type transcriptional activator RhaR Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
B5BJG9 8.32e-08 55 25 3 133 3 rhaR HTH-type transcriptional activator RhaR Salmonella paratyphi A (strain AKU_12601)
A9MZC9 8.32e-08 55 25 3 133 3 rhaR HTH-type transcriptional activator RhaR Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7)
Q5PKG1 8.32e-08 55 25 3 133 3 rhaR HTH-type transcriptional activator RhaR Salmonella paratyphi A (strain ATCC 9150 / SARB42)
B4SZZ4 8.32e-08 55 25 3 133 3 rhaR HTH-type transcriptional activator RhaR Salmonella newport (strain SL254)
B5QWY5 8.32e-08 55 25 3 133 3 rhaR HTH-type transcriptional activator RhaR Salmonella enteritidis PT4 (strain P125109)
Q32A71 2.12e-07 54 25 2 131 3 rhaR HTH-type transcriptional activator RhaR Shigella dysenteriae serotype 1 (strain Sd197)
P09378 2.63e-07 53 25 2 131 1 rhaR HTH-type transcriptional activator RhaR Escherichia coli (strain K12)
A8A710 2.63e-07 53 25 2 131 3 rhaR HTH-type transcriptional activator RhaR Escherichia coli O9:H4 (strain HS)
C5A074 2.63e-07 53 25 2 131 3 rhaR HTH-type transcriptional activator RhaR Escherichia coli (strain K12 / MC4100 / BW2952)
Q8X7B3 2.73e-07 53 25 2 131 3 rhaR HTH-type transcriptional activator RhaR Escherichia coli O157:H7
Q1R413 2.76e-07 53 25 2 131 3 rhaR HTH-type transcriptional activator RhaR Escherichia coli (strain UTI89 / UPEC)
A1AI83 2.76e-07 53 25 2 131 3 rhaR HTH-type transcriptional activator RhaR Escherichia coli O1:K1 / APEC
Q83PD9 2.78e-07 53 25 2 131 3 rhaR HTH-type transcriptional activator RhaR Shigella flexneri
Q0SZ96 2.78e-07 53 25 2 131 3 rhaR HTH-type transcriptional activator RhaR Shigella flexneri serotype 5b (strain 8401)
Q31U83 3.14e-07 53 25 2 131 3 rhaR HTH-type transcriptional activator RhaR Shigella boydii serotype 4 (strain Sb227)
Q8FBD7 3.14e-07 53 25 2 131 3 rhaR HTH-type transcriptional activator RhaR Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
Q0TAF7 3.14e-07 53 25 2 131 3 rhaR HTH-type transcriptional activator RhaR Escherichia coli O6:K15:H31 (strain 536 / UPEC)
A7ZUB8 3.14e-07 53 25 2 131 3 rhaR HTH-type transcriptional activator RhaR Escherichia coli O139:H28 (strain E24377A / ETEC)
P45008 4.95e-07 53 28 1 128 4 HI_1052 Uncharacterized HTH-type transcriptional regulator HI_1052 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
B7LVD8 7.33e-07 52 23 6 255 3 rhaS HTH-type transcriptional activator RhaS Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CCUG 18766 / IAM 14443 / JCM 21226 / LMG 7866 / NBRC 102419 / NCTC 12128 / CDC 0568-73)
B5YZ43 2e-06 51 32 1 103 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli O157:H7 (strain EC4115 / EHEC)
Q8X897 2e-06 51 32 1 103 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli O157:H7
B6I4P8 2.18e-06 51 32 1 103 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli (strain SE11)
B2TVP7 2.75e-06 50 32 1 103 3 rhaS HTH-type transcriptional activator RhaS Shigella boydii serotype 18 (strain CDC 3083-94 / BS512)
Q83PE0 2.85e-06 50 32 1 103 3 rhaS HTH-type transcriptional activator RhaS Shigella flexneri
Q0SZ95 2.85e-06 50 32 1 103 3 rhaS HTH-type transcriptional activator RhaS Shigella flexneri serotype 5b (strain 8401)
Q32A70 3.01e-06 50 32 1 103 3 rhaS HTH-type transcriptional activator RhaS Shigella dysenteriae serotype 1 (strain Sd197)
Q31U84 3.01e-06 50 32 1 103 3 rhaS HTH-type transcriptional activator RhaS Shigella boydii serotype 4 (strain Sb227)
P09377 3.01e-06 50 32 1 103 1 rhaS HTH-type transcriptional activator RhaS Escherichia coli (strain K12)
B1IVH3 3.01e-06 50 32 1 103 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli (strain ATCC 8739 / DSM 1576 / NBRC 3972 / NCIMB 8545 / WDCM 00012 / Crooks)
A8A709 3.01e-06 50 32 1 103 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli O9:H4 (strain HS)
B1XB72 3.01e-06 50 32 1 103 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli (strain K12 / DH10B)
C5A073 3.01e-06 50 32 1 103 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli (strain K12 / MC4100 / BW2952)
B7M6V7 3.01e-06 50 32 1 103 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli O8 (strain IAI1)
B7L9G1 3.01e-06 50 32 1 103 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli (strain 55989 / EAEC)
B1LMU6 3.04e-06 50 32 1 103 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli (strain SMS-3-5 / SECEC)
Q0TAF8 3.07e-06 50 32 1 103 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli O6:K15:H31 (strain 536 / UPEC)
B7UNM6 3.07e-06 50 32 1 103 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli O127:H6 (strain E2348/69 / EPEC)
Q3YV71 3.16e-06 50 32 1 103 3 rhaS HTH-type transcriptional activator RhaS Shigella sonnei (strain Ss046)
A7ZUB7 3.16e-06 50 32 1 103 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli O139:H28 (strain E24377A / ETEC)
Q8CXW5 3.22e-06 50 32 1 103 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
B7N2P7 3.28e-06 50 32 1 103 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli O81 (strain ED1a)
A8AL27 3.5e-06 50 31 1 105 3 rhaS HTH-type transcriptional activator RhaS Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696)
O31517 3.82e-06 50 28 8 156 3 yesN Uncharacterized transcriptional regulatory protein YesN Bacillus subtilis (strain 168)
Q1R414 4.02e-06 50 32 1 103 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli (strain UTI89 / UPEC)
B7NFK3 4.02e-06 50 32 1 103 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC)
A1AI82 4.02e-06 50 32 1 103 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli O1:K1 / APEC
B7NUA1 4.02e-06 50 32 1 103 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli O7:K1 (strain IAI39 / ExPEC)
B7MI37 4.02e-06 50 32 1 103 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli O45:K1 (strain S88 / ExPEC)
P0CL08 4.74e-06 50 33 2 110 4 hilD Transcriptional regulator HilD Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
E1WAC0 4.74e-06 50 33 2 110 4 hilD Transcriptional regulator HilD Salmonella typhimurium (strain SL1344)
Q6GD21 9e-06 50 24 3 153 4 SAS0078 Uncharacterized HTH-type transcriptional regulator SAS0078 Staphylococcus aureus (strain MSSA476)
Q8NYT6 9e-06 50 24 3 153 4 MW0077 Uncharacterized HTH-type transcriptional regulator MW0077 Staphylococcus aureus (strain MW2)
Q5HJR8 9.16e-06 50 24 3 153 4 SACOL0084 Uncharacterized HTH-type transcriptional regulator SACOL0084 Staphylococcus aureus (strain COL)
Q99XB1 9.85e-06 50 24 3 153 4 SAV0101 Uncharacterized HTH-type transcriptional regulator SAV0101 Staphylococcus aureus (strain Mu50 / ATCC 700699)
Q7A882 9.85e-06 50 24 3 153 4 SA0097 Uncharacterized HTH-type transcriptional regulator SA0097 Staphylococcus aureus (strain N315)
Q6GKK1 1.01e-05 50 24 3 153 4 SAR0107 Uncharacterized HTH-type transcriptional regulator SAR0107 Staphylococcus aureus (strain MRSA252)
A4WG90 1.08e-05 49 22 8 251 3 rhaR HTH-type transcriptional activator RhaR Enterobacter sp. (strain 638)
A4WG91 1.4e-05 48 30 1 104 3 rhaS HTH-type transcriptional activator RhaS Enterobacter sp. (strain 638)
P05052 1.47e-05 48 27 2 124 1 appY HTH-type transcriptional regulator AppY Escherichia coli (strain K12)
B4TPQ9 2.18e-05 48 28 1 105 3 rhaS HTH-type transcriptional activator RhaS Salmonella schwarzengrund (strain CVM19633)
B5XZ49 3.31e-05 47 30 1 105 3 rhaS HTH-type transcriptional activator RhaS Klebsiella pneumoniae (strain 342)
P19219 3.53e-05 47 27 2 94 1 adaA Bifunctional transcriptional activator/DNA repair enzyme AdaA Bacillus subtilis (strain 168)
B4TBY3 3.56e-05 47 28 1 105 3 rhaS HTH-type transcriptional activator RhaS Salmonella heidelberg (strain SL476)
B5F0M9 3.56e-05 47 28 1 105 3 rhaS HTH-type transcriptional activator RhaS Salmonella agona (strain SL483)
B5BJG8 3.66e-05 47 28 1 105 3 rhaS HTH-type transcriptional activator RhaS Salmonella paratyphi A (strain AKU_12601)
Q5PKG2 3.66e-05 47 28 1 105 3 rhaS HTH-type transcriptional activator RhaS Salmonella paratyphi A (strain ATCC 9150 / SARB42)
P0A2S9 3.8e-05 47 28 1 105 3 rhaS HTH-type transcriptional activator RhaS Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P0A2T0 3.8e-05 47 28 1 105 3 rhaS HTH-type transcriptional activator RhaS Salmonella typhi
C0Q3L4 3.8e-05 47 28 1 105 3 rhaS HTH-type transcriptional activator RhaS Salmonella paratyphi C (strain RKS4594)
A9MZC8 3.8e-05 47 28 1 105 3 rhaS HTH-type transcriptional activator RhaS Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7)
B4SZZ3 3.8e-05 47 28 1 105 3 rhaS HTH-type transcriptional activator RhaS Salmonella newport (strain SL254)
B5RFC3 3.8e-05 47 28 1 105 3 rhaS HTH-type transcriptional activator RhaS Salmonella gallinarum (strain 287/91 / NCTC 13346)
B5QWY4 3.8e-05 47 28 1 105 3 rhaS HTH-type transcriptional activator RhaS Salmonella enteritidis PT4 (strain P125109)
B5FPP5 3.8e-05 47 28 1 105 3 rhaS HTH-type transcriptional activator RhaS Salmonella dublin (strain CT_02021853)
Q05587 3.92e-05 47 27 1 109 1 pocR Regulatory protein PocR Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
A9MI64 5.38e-05 47 28 1 105 3 rhaS HTH-type transcriptional activator RhaS Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980)
Q57HG8 5.64e-05 47 28 1 105 3 rhaS HTH-type transcriptional activator RhaS Salmonella choleraesuis (strain SC-B67)
Q6DA21 5.66e-05 47 28 1 96 3 rhaR HTH-type transcriptional activator RhaR Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672)
A6TGA9 7.16e-05 46 29 1 105 3 rhaS HTH-type transcriptional activator RhaS Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578)
C6DJR5 8.64e-05 46 27 1 99 3 rhaR HTH-type transcriptional activator RhaR Pectobacterium carotovorum subsp. carotovorum (strain PC1)
A6TGB0 9.99e-05 46 29 1 82 3 rhaR HTH-type transcriptional activator RhaR Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578)
P96662 0.000141 45 31 1 100 4 ydeE Uncharacterized HTH-type transcriptional regulator YdeE Bacillus subtilis (strain 168)
Q936F1 0.000147 46 24 3 153 4 None Uncharacterized HTH-type transcriptional regulator Staphylococcus aureus
P76135 0.000159 45 35 1 73 2 ydeO HTH-type transcriptional regulator YdeO Escherichia coli (strain K12)
Q8X4Z9 0.000176 45 35 1 73 3 Z2209 HTH-type transcriptional regulator YdeO Escherichia coli O157:H7
O31449 0.000177 45 28 1 106 4 ybfI Uncharacterized HTH-type transcriptional regulator YbfI Bacillus subtilis (strain 168)
Q83RF4 0.000182 45 35 1 73 3 ydeO HTH-type transcriptional regulator YdeO Shigella flexneri
Q8FHG0 0.000186 45 35 1 73 3 ydeO HTH-type transcriptional regulator YdeO Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
O32071 0.000243 45 32 1 83 4 ytdP Uncharacterized HTH-type transcriptional regulator YtdP Bacillus subtilis (strain 168)
P63203 0.000455 44 30 3 148 3 gadW HTH-type transcriptional regulator GadW Shigella flexneri
P63201 0.000455 44 30 3 148 1 gadW HTH-type transcriptional regulator GadW Escherichia coli (strain K12)
P63202 0.000455 44 30 3 148 3 gadW HTH-type transcriptional regulator GadW Escherichia coli O157:H7
Q52620 0.000701 42 29 2 103 4 pqrA Probable transcription factor PqrA Proteus vulgaris
Q65Q30 0.000861 43 25 1 98 3 rhaR HTH-type transcriptional activator RhaR Mannheimia succiniciproducens (strain KCTC 0769BP / MBEL55E)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS08790
Feature type CDS
Gene -
Product helix-turn-helix transcriptional regulator
Location 1922171 - 1922956 (strand: -1)
Length 786 (nucleotides) / 261 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_1919
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF07883 Cupin domain
PF12833 Helix-turn-helix domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG2207 Transcription (K) K AraC-type DNA-binding domain and AraC-containing proteins

Protein Sequence

MTIEQQKEMQWLLSDPDTVRFRDEQLLAETEFRYHQHEFGQLLYVISGVMDLEAGGQRFLAPPEFSVWIPEKVGHASYNKKTLSFKVLDIAPSWCEGLLDKPCLIQLSPIFSTIFADFFRRGVCKPQTKEDLRLSQVLIDQLKVSPIHHTYLPSSKDKLLAPVLAALEQNPADNTSLELWAKKRYTSERTLSRRCQQELGMSFSEWRKRLRFLHAISLLEQGKSVNDVAFDVGYSSSSSFIAMFQQFAGTTPERFRRLPNG

Flanking regions ( +/- flanking 50bp)

AGACAACCGATAGGCCAATAAAGACAAAACGATAAAAGAGCAACATTAAGATGACAATTGAACAACAAAAAGAGATGCAGTGGTTACTCTCTGATCCAGATACGGTCCGTTTTCGTGATGAGCAATTGCTTGCAGAAACTGAATTTCGTTATCATCAACATGAGTTTGGTCAATTGCTTTATGTGATCTCTGGAGTAATGGATTTAGAAGCTGGCGGGCAACGTTTTTTAGCGCCACCTGAATTTAGTGTATGGATCCCTGAAAAAGTAGGGCACGCAAGTTACAATAAAAAAACCTTATCTTTTAAGGTGCTAGATATTGCACCCAGTTGGTGTGAAGGTTTATTGGATAAACCCTGTCTTATTCAACTAAGTCCTATTTTTTCGACGATTTTTGCCGATTTCTTCCGTCGTGGCGTTTGTAAACCGCAAACAAAAGAAGATCTACGTTTATCTCAAGTGTTAATAGACCAACTAAAAGTATCTCCTATTCACCATACCTATTTACCTTCCTCAAAAGATAAGCTGTTAGCACCCGTTTTGGCAGCATTAGAGCAAAATCCTGCTGATAATACCTCATTAGAATTATGGGCAAAAAAACGTTATACCTCAGAAAGAACCTTATCACGTCGTTGTCAGCAAGAGTTAGGCATGTCTTTTAGTGAATGGCGTAAGCGATTACGTTTTTTACATGCTATCTCTTTGTTAGAACAAGGAAAAAGTGTTAATGATGTGGCCTTTGATGTTGGATATAGCTCATCATCCTCATTTATTGCCATGTTTCAGCAATTTGCTGGAACAACACCAGAAAGATTTCGTCGCTTACCCAATGGTTAAGGTTTCTTTTCATATATTTACTTAAAATAGCGTCAGTTTTTATCGTCAAT