Homologs in group_195

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8 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_11000 FBDBKF_11000 48.4 Morganella morganii S1 uspA Nucleotide-binding universal stress protein, UspA family
EHELCC_05225 EHELCC_05225 48.4 Morganella morganii S2 uspA Nucleotide-binding universal stress protein, UspA family
NLDBIP_05545 NLDBIP_05545 48.4 Morganella morganii S4 uspA Nucleotide-binding universal stress protein, UspA family
LHKJJB_02425 LHKJJB_02425 48.4 Morganella morganii S3 uspA Nucleotide-binding universal stress protein, UspA family
HKOGLL_15805 HKOGLL_15805 48.4 Morganella morganii S5 uspA Nucleotide-binding universal stress protein, UspA family
F4V73_RS08225 F4V73_RS08225 46.9 Morganella psychrotolerans - universal stress protein
PMI_RS07865 PMI_RS07865 34.4 Proteus mirabilis HI4320 - universal stress protein
PMI_RS09630 PMI_RS09630 47.7 Proteus mirabilis HI4320 - universal stress protein

Distribution of the homologs in the orthogroup group_195

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_195

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P67091 7.61e-35 121 41 0 144 1 uspF Universal stress protein F Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P67092 7.61e-35 121 41 0 144 3 uspF Universal stress protein F Salmonella typhi
P37903 3.79e-33 116 41 0 144 1 uspF Universal stress protein F Escherichia coli (strain K12)
P0A4P8 4.77e-33 116 41 0 144 3 uspF Universal stress protein F Shigella flexneri
P0A4P6 4.77e-33 116 41 0 144 3 uspF Universal stress protein F Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
Q0TI19 4.77e-33 116 41 0 144 3 uspF Universal stress protein F Escherichia coli O6:K15:H31 (strain 536 / UPEC)
P0A4P7 4.77e-33 116 41 0 144 3 uspF Universal stress protein F Escherichia coli O157:H7
P67093 7.48e-26 98 34 2 144 3 uspG Universal stress protein G Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P67094 7.48e-26 98 34 2 144 3 uspG Universal stress protein G Salmonella typhi
Q8XBT3 3.88e-25 96 33 2 144 3 uspG Universal stress protein G Escherichia coli O157:H7
Q8FK07 6.26e-25 95 34 2 144 3 uspG Universal stress protein G Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P39177 1.25e-24 95 32 2 144 1 uspG Universal stress protein UP12 Escherichia coli (strain K12)
Q83M07 2.45e-24 94 32 2 144 3 uspG Universal stress protein G Shigella flexneri
Q57951 2.86e-05 45 27 4 150 3 MJ0531 Universal stress protein MJ0531 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS07875
Feature type CDS
Gene -
Product universal stress protein
Location 1722878 - 1723312 (strand: -1)
Length 435 (nucleotides) / 144 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_195
Orthogroup size 9
N. genomes 7

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Genomic region

Domains

PF00582 Universal stress protein family

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0589 Signal transduction mechanisms (T) T Nucleotide-binding universal stress protein, UspA family

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K14061 universal stress protein F - -

Protein Sequence

MYKTILVPIDIDEDNLLNKAITLVENIAKREDPYVHFLYVLPKLPQSSYYRLVMNGDQLDQVCLKKSAEKELKKIIARFDLPEDRIETHICIGKPRDGILQIADQVNADLIVVSSHNPEVDSYHLGSTAADITRYAKRSVMVAR

Flanking regions ( +/- flanking 50bp)

ATTTTTTTCAAAATAGACTATCCTACAATTAAAAAATAATAGGAGGCGATATGTATAAGACTATTTTGGTTCCCATTGATATCGATGAAGATAACTTACTAAATAAAGCCATTACATTAGTGGAGAACATTGCCAAAAGAGAAGATCCCTATGTCCATTTTTTGTATGTTTTACCAAAGTTGCCACAATCTTCTTATTATCGCTTAGTGATGAATGGCGATCAACTTGACCAAGTATGCTTAAAAAAATCAGCAGAAAAAGAGTTAAAAAAAATTATTGCTCGATTTGATTTACCGGAAGATCGTATTGAAACACATATCTGTATTGGTAAACCACGGGATGGCATATTGCAGATAGCCGATCAGGTTAATGCTGATTTAATTGTTGTTAGCTCACATAATCCTGAAGTAGACAGCTATCATTTAGGCTCAACAGCGGCAGATATTACCCGTTATGCGAAACGTTCAGTGATGGTAGCAAGATAGCCGACTCTTTATTTTATTAGCAATACCATTAAGCGGTTGACGGCGTCTTA