Homologs in group_649

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_01605 FBDBKF_01605 63.3 Morganella morganii S1 rlmA 23S rRNA (guanine(745)-N(1))-methyltransferase
EHELCC_02075 EHELCC_02075 63.3 Morganella morganii S2 rlmA 23S rRNA (guanine(745)-N(1))-methyltransferase
NLDBIP_01385 NLDBIP_01385 63.3 Morganella morganii S4 rlmA 23S rRNA (guanine(745)-N(1))-methyltransferase
LHKJJB_00650 LHKJJB_00650 63.3 Morganella morganii S3 rlmA 23S rRNA (guanine(745)-N(1))-methyltransferase
HKOGLL_00690 HKOGLL_00690 63.3 Morganella morganii S5 rlmA 23S rRNA (guanine(745)-N(1))-methyltransferase
F4V73_RS03945 F4V73_RS03945 62.6 Morganella psychrotolerans rlmA 23S rRNA (guanine(745)-N(1))-methyltransferase

Distribution of the homologs in the orthogroup group_649

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_649

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P36999 1.92e-108 317 57 1 269 1 rlmA 23S rRNA (guanine(745)-N(1))-methyltransferase Escherichia coli (strain K12)
P42313 1.19e-28 113 29 10 276 3 yxjB Putative 23S rRNA (guanine-N(1)-)-methyltransferase YxjB Bacillus subtilis (strain 168)
P37000 6.01e-27 108 32 9 262 3 myrA Putative 23S rRNA (guanine-N(1)-)-methyltransferase Micromonospora griseorubida
Q9S1M6 7.72e-24 100 28 6 243 1 rlmAII 23S rRNA (guanine(748)-N(1))-methyltransferase Streptomyces fradiae
Q9WZL2 5.35e-06 49 26 4 143 3 menG Demethylmenaquinone methyltransferase Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8)
Q58648 6.22e-05 47 33 7 119 4 MJ1252 Uncharacterized protein MJ1252 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
Q21FY5 7.82e-05 47 27 4 132 3 bioC Biotin biosynthesis bifunctional protein BioHC Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024)
Q5TEU4 8.07e-05 47 24 3 131 1 NDUFAF5 Arginine-hydroxylase NDUFAF5, mitochondrial Homo sapiens
A2APY7 0.000102 46 24 3 131 1 Ndufaf5 Arginine-hydroxylase NDUFAF5, mitochondrial Mus musculus
B2GV71 0.000149 46 23 3 131 2 Ndufaf5 Arginine-hydroxylase NDUFAF5, mitochondrial Rattus norvegicus
Q5RBS1 0.000159 46 24 3 131 2 NDUFAF5 Arginine-hydroxylase NDUFAF5, mitochondrial Pongo abelii

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS07855
Feature type CDS
Gene rlmA
Product 23S rRNA (guanine(745)-N(1))-methyltransferase
Location 1719790 - 1720602 (strand: -1)
Length 813 (nucleotides) / 270 (amino acids)
In genomic island -

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_649
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF13847 Methyltransferase domain
PF21302 RlmA, N-terminal

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG2226 Coenzyme transport and metabolism (H) H Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K00563 23S rRNA (guanine745-N1)-methyltransferase [EC:2.1.1.187] - -

Protein Sequence

MSYQCPLCSQPLALKAHSWVCDNHHQFDCAKEGYVNLLPVQFKRSKEPGDSAEMISARRDFLDAGFYQPMRDKVAQLVAEYLPKDNPQVLDIGCGEGYYTYQIYQQLKSKNPQVYGLDVAKVAIKYAAKRYAPIQFCVASSQRLPFCDASLNAVVRIYAPCNAGELTRVIAQDGYIITVTPAPRHLYQLKALIYSTVHLHPLKDEIFAGFKLIAQHQVAYNMALTGKQAVDLLQMTPFAWRASEEVKETLDKTEQFACETDFLIRVYQRV

Flanking regions ( +/- flanking 50bp)

AGATATGTTATTATCTCTCCCAATTTTATTTTGGAATATGTAAAAATATTATGTCTTATCAATGTCCACTTTGCTCCCAGCCACTTGCTCTTAAAGCCCATAGTTGGGTTTGTGACAATCACCATCAATTTGATTGCGCTAAAGAGGGGTATGTTAATTTACTCCCGGTACAATTTAAACGTTCTAAAGAGCCGGGGGATAGTGCAGAGATGATTAGTGCTCGGCGTGATTTTTTAGATGCGGGCTTTTATCAACCAATGCGAGACAAAGTGGCTCAATTAGTGGCTGAATATTTACCGAAAGATAATCCTCAGGTGTTAGATATTGGTTGTGGAGAAGGGTATTATACCTATCAGATATATCAACAACTAAAGTCAAAAAATCCACAAGTCTATGGCTTAGATGTGGCGAAGGTTGCCATTAAATATGCAGCAAAACGCTATGCTCCTATTCAGTTTTGCGTTGCGTCCAGCCAACGTCTGCCTTTTTGTGATGCGTCATTAAATGCAGTGGTACGTATTTATGCCCCTTGCAATGCCGGCGAATTAACGCGAGTTATTGCTCAAGATGGATATATTATTACGGTGACACCCGCACCACGCCATCTTTATCAACTCAAAGCGTTGATTTATTCAACAGTGCATCTTCATCCACTAAAAGATGAAATATTTGCTGGGTTCAAGCTAATAGCACAGCATCAAGTTGCTTATAATATGGCGTTAACAGGTAAACAAGCGGTTGATTTATTACAAATGACGCCTTTTGCTTGGCGTGCGAGTGAAGAGGTAAAAGAGACATTAGATAAAACAGAGCAATTTGCTTGTGAAACTGATTTTTTAATTCGTGTTTATCAACGTGTTTAGAATAAAAAAGCTTAGGTTGTGTTCATACCTAAGCTTTTTCATATTATGAC