Homologs in group_649

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_01605 FBDBKF_01605 89.3 Morganella morganii S1 rlmA 23S rRNA (guanine(745)-N(1))-methyltransferase
EHELCC_02075 EHELCC_02075 89.3 Morganella morganii S2 rlmA 23S rRNA (guanine(745)-N(1))-methyltransferase
NLDBIP_01385 NLDBIP_01385 89.3 Morganella morganii S4 rlmA 23S rRNA (guanine(745)-N(1))-methyltransferase
LHKJJB_00650 LHKJJB_00650 89.3 Morganella morganii S3 rlmA 23S rRNA (guanine(745)-N(1))-methyltransferase
HKOGLL_00690 HKOGLL_00690 89.3 Morganella morganii S5 rlmA 23S rRNA (guanine(745)-N(1))-methyltransferase
PMI_RS07855 PMI_RS07855 62.6 Proteus mirabilis HI4320 rlmA 23S rRNA (guanine(745)-N(1))-methyltransferase

Distribution of the homologs in the orthogroup group_649

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_649

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P36999 3.23e-117 339 58 1 269 1 rlmA 23S rRNA (guanine(745)-N(1))-methyltransferase Escherichia coli (strain K12)
P42313 2.38e-26 107 26 9 282 3 yxjB Putative 23S rRNA (guanine-N(1)-)-methyltransferase YxjB Bacillus subtilis (strain 168)
Q9S1M6 1.6e-25 105 31 6 243 1 rlmAII 23S rRNA (guanine(748)-N(1))-methyltransferase Streptomyces fradiae
P37000 8.95e-20 89 27 7 288 3 myrA Putative 23S rRNA (guanine-N(1)-)-methyltransferase Micromonospora griseorubida
A8FEK9 1.56e-08 57 27 7 173 3 menG Demethylmenaquinone methyltransferase Bacillus pumilus (strain SAFR-032)
B1HTA6 5.28e-08 55 33 5 116 3 menG Demethylmenaquinone methyltransferase Lysinibacillus sphaericus (strain C3-41)
Q65I24 9.35e-08 55 29 6 139 3 menG Demethylmenaquinone methyltransferase Bacillus licheniformis (strain ATCC 14580 / DSM 13 / JCM 2505 / CCUG 7422 / NBRC 12200 / NCIMB 9375 / NCTC 10341 / NRRL NRS-1264 / Gibson 46)
B3PI89 1.46e-07 55 32 3 110 3 bioC Biotin biosynthesis bifunctional protein BioHC Cellvibrio japonicus (strain Ueda107)
C5BMZ8 2.71e-07 54 28 4 122 3 bioC Biotin biosynthesis bifunctional protein BioHC Teredinibacter turnerae (strain ATCC 39867 / T7901)
O86169 4.26e-07 53 31 4 123 3 menG Demethylmenaquinone methyltransferase Geobacillus stearothermophilus
A1SE26 9.72e-07 52 30 6 153 3 menG Demethylmenaquinone methyltransferase Nocardioides sp. (strain ATCC BAA-499 / JS614)
Q4L6H3 1.57e-06 51 34 4 98 3 menG Demethylmenaquinone methyltransferase Staphylococcus haemolyticus (strain JCSC1435)
A1R990 3.68e-06 50 31 5 133 3 menG Demethylmenaquinone methyltransferase Paenarthrobacter aurescens (strain TC1)
C5D3E5 4e-06 50 30 4 123 3 menG Demethylmenaquinone methyltransferase Geobacillus sp. (strain WCH70)
P65349 5.05e-06 50 32 4 107 3 BQ2027_MB3374 Uncharacterized methyltransferase Mb3374 Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)
P9WK01 5.05e-06 50 32 4 107 1 Rv3342 Uncharacterized methyltransferase Rv3342 Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WK00 5.05e-06 50 32 4 107 3 MT3445 Uncharacterized methyltransferase MT3445 Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
Q5KXU0 6.63e-06 49 30 4 123 3 menG Demethylmenaquinone methyltransferase Geobacillus kaustophilus (strain HTA426)
A9WRT1 6.84e-06 49 32 2 100 3 menG Demethylmenaquinone methyltransferase Renibacterium salmoninarum (strain ATCC 33209 / DSM 20767 / JCM 11484 / NBRC 15589 / NCIMB 2235)
Q8CSH9 7.87e-06 49 27 5 122 3 menG Demethylmenaquinone methyltransferase Staphylococcus epidermidis (strain ATCC 12228 / FDA PCI 1200)
Q5HP74 7.87e-06 49 27 5 122 3 menG Demethylmenaquinone methyltransferase Staphylococcus epidermidis (strain ATCC 35984 / DSM 28319 / BCRC 17069 / CCUG 31568 / BM 3577 / RP62A)
A0PQX0 9.18e-06 49 29 4 102 3 MUL_2377 Phthiotriol/phenolphthiotriol dimycocerosates methyltransferase 1 Mycobacterium ulcerans (strain Agy99)
C5C0T0 1.09e-05 48 30 7 173 3 menG Demethylmenaquinone methyltransferase Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / CCUG 43141 / JCM 11478 / NBRC 16432 / NCIMB 13614 / HKI 0122)
Q5WGT4 1.37e-05 48 27 6 155 3 menG Demethylmenaquinone methyltransferase Shouchella clausii (strain KSM-K16)
A6W0X8 1.93e-05 48 28 6 164 3 bioC Malonyl-[acyl-carrier protein] O-methyltransferase Marinomonas sp. (strain MWYL1)
Q8KZ94 2.48e-05 48 33 5 120 1 rebM Demethylrebeccamycin-D-glucose O-methyltransferase Lentzea aerocolonigenes
P31113 3.07e-05 47 29 6 125 1 menG Demethylmenaquinone methyltransferase Bacillus subtilis (strain 168)
P9WIN3 6.15e-05 47 30 4 98 1 Rv2952 Phthiotriol/phenolphthiotriol dimycocerosates methyltransferase Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WIN2 6.15e-05 47 30 4 98 3 MT3026 Phthiotriol/phenolphthiotriol dimycocerosates methyltransferase Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
A5U6W0 6.15e-05 47 30 4 98 3 MRA_2979 Phthiotriol/phenolphthiotriol dimycocerosates methyltransferase Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra)
A1KMU6 6.15e-05 47 30 4 98 3 BCG_2973 Phthiotriol/phenolphthiotriol dimycocerosates methyltransferase Mycobacterium bovis (strain BCG / Pasteur 1173P2)
Q7TXK3 6.15e-05 47 30 4 98 3 BQ2027_MB2976 Phthiotriol/phenolphthiotriol dimycocerosates methyltransferase Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)
A0PQ29 8.34e-05 46 30 4 99 3 MUL_2009 Probable phthiotriol/phenolphthiotriol dimycocerosates methyltransferase 2 Mycobacterium ulcerans (strain Agy99)
Q8CWG0 0.000101 46 28 4 108 3 menG Demethylmenaquinone methyltransferase Oceanobacillus iheyensis (strain DSM 14371 / CIP 107618 / JCM 11309 / KCTC 3954 / HTE831)
P67064 0.000117 45 27 5 129 3 menG Demethylmenaquinone methyltransferase Tropheryma whipplei (strain Twist)
P67065 0.000117 45 27 5 129 3 menG Demethylmenaquinone methyltransferase Tropheryma whipplei (strain TW08/27)
Q21FY5 0.000121 46 30 5 122 3 bioC Biotin biosynthesis bifunctional protein BioHC Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024)
A6UYW3 0.000126 46 27 4 117 3 bioC Malonyl-[acyl-carrier protein] O-methyltransferase Pseudomonas aeruginosa (strain PA7)
Q8KF69 0.000126 45 26 2 109 3 menG Demethylmenaquinone methyltransferase Chlorobaculum tepidum (strain ATCC 49652 / DSM 12025 / NBRC 103806 / TLS)
Q9LM02 0.000132 46 36 5 101 1 SMT1 Cycloartenol-C-24-methyltransferase Arabidopsis thaliana
Q83E64 0.000138 46 27 5 140 3 bioC1 Malonyl-[acyl-carrier protein] O-methyltransferase 1 Coxiella burnetii (strain RSA 493 / Nine Mile phase I)
E4QJB8 0.000154 45 27 4 143 3 bioC Malonyl-[acyl-carrier protein] O-methyltransferase Methylovorus sp. (strain MP688)
B3QLI9 0.000162 45 26 2 105 3 menG Demethylmenaquinone methyltransferase Chlorobaculum parvum (strain DSM 263 / NCIMB 8327)
A7GN50 0.000177 45 33 6 118 3 menG Demethylmenaquinone methyltransferase Bacillus cytotoxicus (strain DSM 22905 / CIP 110041 / 391-98 / NVH 391-98)
A0A0A2IBN3 0.000197 45 29 3 108 1 cnsE O-methyltransferase cnsE Penicillium expansum
Q9RMN9 0.000262 45 27 3 110 3 mtf2 Fatty-acid O-methyltransferase Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155)
P74388 0.000516 44 35 4 100 1 sll0418 2-methyl-6-phytyl-1,4-hydroquinone methyltransferase Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
A2APY7 0.000695 44 29 5 131 1 Ndufaf5 Arginine-hydroxylase NDUFAF5, mitochondrial Mus musculus
Q9CD86 0.000893 43 29 4 98 3 ML0130 Phthiotriol/phenolphthiotriol dimycocerosates methyltransferase Mycobacterium leprae (strain TN)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS03945
Feature type CDS
Gene rlmA
Product 23S rRNA (guanine(745)-N(1))-methyltransferase
Location 837998 - 838813 (strand: 1)
Length 816 (nucleotides) / 271 (amino acids)
In genomic island -

Contig

Accession NZ_VXKB01000001
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_649
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF13649 Methyltransferase domain
PF21302 RlmA, N-terminal

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG2226 Coenzyme transport and metabolism (H) H Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K00563 23S rRNA (guanine745-N1)-methyltransferase [EC:2.1.1.187] - -

Protein Sequence

MSYQCPLCQHPLDRRSNSYCCDNNHQFDLAKEGYINLLPVQFKRSKEPGDSKEMMQARRAFLDNHHYRPMRDQVIAAFDQFLPEQAQAVLDIGCGEGYYTGALAESLAARDVVVYGLDVAKVAVRFGAKRYPQVNFSVASSQRLPFEDNSLEGVLRIYAPCNPDELTRVVKPGGIIVTVTPGPRHLYQLKSLIYTDVHLHPLKEECFPGFSPVQEYQVAYPMLLAGADATALLSMTPFAWKATEAVKTQLAAETEFSCETDFLIRVYRRDA

Flanking regions ( +/- flanking 50bp)

GTTACCGGCGCTGCCGGTTGCACTCTTATCCTATTTCACAGTGAATGATTATGTCTTACCAATGCCCGCTTTGCCAACACCCGCTGGATCGCCGTTCAAACAGTTATTGTTGCGATAATAACCATCAGTTTGATCTCGCGAAAGAGGGATATATCAATCTGTTACCTGTTCAGTTTAAGCGCTCAAAAGAGCCGGGAGACAGTAAAGAGATGATGCAGGCACGCAGAGCGTTTCTGGATAATCATCATTATCGCCCGATGCGTGATCAGGTTATTGCGGCGTTTGACCAGTTTTTACCGGAACAGGCGCAGGCAGTTCTGGATATCGGCTGTGGCGAGGGGTATTACACCGGCGCGCTGGCGGAAAGCCTTGCTGCGCGTGATGTCGTGGTTTACGGGCTGGATGTGGCGAAAGTTGCGGTACGTTTTGGTGCAAAGCGGTATCCGCAGGTGAATTTCAGCGTGGCGTCCAGTCAGCGGCTGCCGTTTGAAGATAACAGTCTGGAAGGCGTATTGCGCATTTATGCTCCCTGTAACCCGGATGAGCTAACCCGCGTGGTGAAGCCGGGCGGGATTATTGTGACCGTCACACCGGGTCCGCGTCATTTATACCAGCTGAAATCTCTGATTTATACTGATGTGCATCTTCATCCGCTGAAAGAGGAATGTTTCCCGGGATTCAGTCCGGTACAGGAGTATCAGGTAGCATATCCGATGCTATTGGCGGGGGCAGATGCAACCGCCTTGCTCTCGATGACGCCGTTTGCGTGGAAAGCAACAGAGGCGGTGAAAACCCAACTGGCAGCAGAAACGGAATTTTCCTGTGAAACTGATTTTCTGATCCGGGTTTACCGGCGTGATGCATAAATAAAATGACCCGCGACAGCGGGTCATTTTATTGCGAGCAAAGCAGAACG