Homologs in group_975

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_05390 FBDBKF_05390 76.4 Morganella morganii S1 xthA exodeoxyribonuclease III
EHELCC_12200 EHELCC_12200 76.4 Morganella morganii S2 xthA exodeoxyribonuclease III
NLDBIP_12540 NLDBIP_12540 76.4 Morganella morganii S4 xthA exodeoxyribonuclease III
LHKJJB_12400 LHKJJB_12400 76.4 Morganella morganii S3 xthA exodeoxyribonuclease III
HKOGLL_11015 HKOGLL_11015 76.4 Morganella morganii S5 xthA exodeoxyribonuclease III
F4V73_RS05845 F4V73_RS05845 76.0 Morganella psychrotolerans xthA exodeoxyribonuclease III

Distribution of the homologs in the orthogroup group_975

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_975

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P09030 8.3e-160 447 77 0 267 1 xthA Exodeoxyribonuclease III Escherichia coli (strain K12)
P0A1A9 1.13e-159 447 77 0 268 3 xthA Exodeoxyribonuclease III Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P0A1B0 1.13e-159 447 77 0 268 3 xthA Exodeoxyribonuclease III Salmonella typhi
P44318 4.93e-147 415 71 0 267 3 xthA Exodeoxyribonuclease III Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P37454 2.36e-28 111 29 8 266 1 exoA Exodeoxyribonuclease Bacillus subtilis (strain 168)
O26314 2.11e-27 109 28 8 272 1 MTH_212 DNA uridine endonuclease Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H)
P51173 3.09e-24 103 28 6 264 2 apeA DNA-(apurinic or apyrimidinic site) endonuclease Dictyostelium discoideum
A0MTA1 6.27e-23 98 28 11 269 1 apex1 DNA repair nuclease APEX1 Danio rerio
P27864 6.8e-22 98 29 8 265 1 Rrp1 Recombination repair protein 1 Drosophila melanogaster
P45951 1.13e-20 94 28 10 278 1 ARP DNA-(apurinic or apyrimidinic site) endonuclease, chloroplastic Arabidopsis thaliana
Q6DDT4 3.03e-19 90 28 9 314 1 apex2.L DNA-(apurinic or apyrimidinic site) endonuclease 2 Xenopus laevis
F4JNY0 1.49e-18 88 26 11 290 1 APE2 DNA-(apurinic or apyrimidinic site) endonuclease 2 Arabidopsis thaliana
P23196 2.21e-18 86 24 10 269 1 APEX1 DNA repair nuclease/redox regulator APEX1 Bos taurus
P28352 5.36e-18 85 25 10 269 1 Apex1 DNA repair nuclease/redox regulator APEX1 Mus musculus
A1YES6 8.74e-18 84 24 10 269 3 APEX1 DNA repair nuclease/redox regulator APEX1 Gorilla gorilla gorilla
A2T7I6 9.28e-18 84 24 10 269 3 APEX1 DNA repair nuclease/redox regulator APEX1 Pongo pygmaeus
P43138 1.13e-17 84 24 10 269 1 Apex1 DNA repair nuclease/redox regulator APEX1 Rattus norvegicus
P27695 1.4e-17 84 24 10 269 1 APEX1 DNA repair nuclease/redox regulator APEX1 Homo sapiens
A2T6Y4 1.77e-17 84 24 10 269 3 APEX1 DNA repair nuclease/redox regulator APEX1 Pan troglodytes
A1YFZ3 1.77e-17 84 24 10 269 3 APEX1 DNA repair nuclease/redox regulator APEX1 Pan paniscus
P0A2X4 4.52e-13 70 27 13 298 3 exoA Exodeoxyribonuclease Streptococcus pneumoniae (strain ATCC BAA-255 / R6)
P0A2X3 4.52e-13 70 27 13 298 3 exoA Exodeoxyribonuclease Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4)
Q5E9N9 7.7e-12 68 28 16 318 2 APEX2 DNA-(apurinic or apyrimidinic site) endonuclease 2 Bos taurus
Q9UBZ4 5.38e-11 65 28 14 318 1 APEX2 DNA-(apurinic or apyrimidinic site) endonuclease 2 Homo sapiens
Q68G58 2.69e-10 63 27 14 318 1 Apex2 DNA-(apurinic or apyrimidinic site) endonuclease 2 Mus musculus
Q5XF07 8.24e-10 62 26 12 314 1 APE1L DNA-(apurinic or apyrimidinic site) endonuclease Arabidopsis thaliana
P87175 8.58e-10 62 23 11 318 1 apn2 DNA-(apurinic or apyrimidinic site) endonuclease 2 Schizosaccharomyces pombe (strain 972 / ATCC 24843)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS07245
Feature type CDS
Gene xthA
Product exodeoxyribonuclease III
Location 1585886 - 1586692 (strand: 1)
Length 807 (nucleotides) / 268 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_975
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF03372 Endonuclease/Exonuclease/phosphatase family

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0708 Replication, recombination and repair (L) L Exonuclease III

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K01142 exodeoxyribonuclease III [EC:3.1.11.2] Base excision repair -

Protein Sequence

MKFVSFNINGLRARPHQLEAIVEKHQPDVIGLQETKVHDDMFPLETVSALGYHVFYHGQKGHYGVALLTKAKPVAVRKGFPGDGEEAQRRMIMADIETPAGLLTVMNGYFPQGESRDHETKFPAKAKFYADLQQYLTTSLTPSSPVLIMGDLNISPTDKDIGIGENNMKRWLKMGKCSFLPEEREWLATLMGWGLTDTYRAQHPEVEDQFSWFDYRSKGFDDNRGLRIDLLLASRCLADNCISTGIDYDIRAMEKPSDHAPVWAEFKL

Flanking regions ( +/- flanking 50bp)

CTGTTAGTATAAGTTATCCTATTATTCAATCTATAAATGGTTATAGTCACATGAAATTTGTCTCATTCAATATTAATGGATTACGTGCTCGCCCTCATCAGCTCGAAGCCATTGTAGAAAAACACCAACCCGATGTTATTGGACTGCAAGAAACAAAAGTTCATGATGATATGTTTCCATTAGAAACTGTCAGTGCCTTGGGCTACCACGTTTTTTATCATGGACAGAAAGGCCATTATGGTGTGGCTTTGTTAACTAAGGCGAAACCTGTCGCGGTACGTAAAGGATTCCCTGGTGATGGTGAAGAAGCTCAGCGTCGTATGATCATGGCGGACATTGAAACCCCCGCTGGATTATTAACGGTAATGAATGGTTATTTCCCTCAAGGTGAAAGTCGTGATCATGAGACAAAATTCCCTGCTAAAGCAAAATTCTATGCTGATCTACAGCAGTATCTGACCACCAGCTTAACGCCTTCCTCTCCCGTACTGATTATGGGGGATTTAAATATTAGCCCAACCGATAAAGATATCGGTATCGGCGAAAATAATATGAAACGTTGGCTAAAAATGGGTAAATGTTCATTTTTACCGGAAGAGCGAGAGTGGTTAGCAACGCTTATGGGTTGGGGATTAACCGATACTTACCGCGCCCAACATCCTGAAGTCGAAGACCAATTTTCTTGGTTTGATTATCGCTCAAAAGGCTTTGATGATAACCGAGGCTTACGTATCGATTTACTGCTAGCAAGTCGTTGCTTAGCAGATAATTGTATTTCAACCGGCATTGACTACGATATTCGTGCGATGGAAAAACCTTCCGATCACGCACCTGTTTGGGCCGAGTTTAAGCTTTAATTCCCTCTCCCCCCTTATTGATAAACCCCACTTTAAATAGATTAAAAGTG