Homologs in group_963

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_05305 FBDBKF_05305 72.7 Morganella morganii S1 ddpA ABC-type transport system, periplasmic component
EHELCC_12285 EHELCC_12285 72.7 Morganella morganii S2 ddpA ABC-type transport system, periplasmic component
NLDBIP_12625 NLDBIP_12625 72.7 Morganella morganii S4 ddpA ABC-type transport system, periplasmic component
LHKJJB_12485 LHKJJB_12485 72.7 Morganella morganii S3 ddpA ABC-type transport system, periplasmic component
HKOGLL_11100 HKOGLL_11100 72.7 Morganella morganii S5 ddpA ABC-type transport system, periplasmic component
F4V73_RS05760 F4V73_RS05760 72.7 Morganella psychrotolerans - ABC transporter substrate-binding protein

Distribution of the homologs in the orthogroup group_963

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_963

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P76128 3.69e-37 147 26 13 518 2 ddpA Probable D,D-dipeptide-binding periplasmic protein DdpA Escherichia coli (strain K12)
A0A0H2ZGV7 6e-20 96 24 15 461 1 dppA4 Di/tripeptide-binding protein 4 Pseudomonas aeruginosa (strain UCBPP-PA14)
P33950 9.06e-20 96 25 15 485 1 hbpA Heme-binding protein A Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P23847 4.61e-19 94 22 15 520 1 dppA Dipeptide-binding protein Escherichia coli (strain K12)
Q6D3B0 8.09e-17 86 22 14 490 3 gsiB Glutathione-binding protein GsiB Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672)
Q9HVS4 1.91e-16 85 23 17 466 1 PA4497 Tripeptide-binding protein Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
A0A0H2ZGW2 1.04e-15 83 23 17 466 1 dppA2 Di/tripeptide-binding protein 2 Pseudomonas aeruginosa (strain UCBPP-PA14)
P36634 1.14e-14 80 24 20 541 2 sapA Peptide transport periplasmic protein SapA Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P33590 1.16e-13 77 25 17 459 1 nikA Nickel-binding periplasmic protein Escherichia coli (strain K12)
Q5PGP4 1.28e-13 76 21 15 504 3 gsiB Glutathione-binding protein GsiB Salmonella paratyphi A (strain ATCC 9150 / SARB42)
Q32IB6 1.46e-13 76 21 14 496 3 gsiB Glutathione-binding protein GsiB Shigella dysenteriae serotype 1 (strain Sd197)
Q8ZQM3 1.58e-13 76 21 15 504 3 gsiB Glutathione-binding protein GsiB Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q8Z863 2.33e-13 75 21 15 504 3 gsiB Glutathione-binding protein GsiB Salmonella typhi
Q1RE95 6.66e-13 74 21 14 496 3 gsiB Glutathione-binding protein GsiB Escherichia coli (strain UTI89 / UPEC)
Q8CW88 6.66e-13 74 21 14 496 3 gsiB Glutathione-binding protein GsiB Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
A1A968 6.66e-13 74 21 14 496 3 gsiB Glutathione-binding protein GsiB Escherichia coli O1:K1 / APEC
Q57RB1 8.61e-13 74 21 15 504 3 gsiB Glutathione-binding protein GsiB Salmonella choleraesuis (strain SC-B67)
Q0TJL8 1.04e-12 73 21 14 496 3 gsiB Glutathione-binding protein GsiB Escherichia coli O6:K15:H31 (strain 536 / UPEC)
Q8X6V9 1.21e-12 73 21 14 496 3 gsiB Glutathione-binding protein GsiB Escherichia coli O157:H7
Q323W4 2.83e-12 72 21 14 496 3 gsiB Glutathione-binding protein GsiB Shigella boydii serotype 4 (strain Sb227)
Q821B3 4.59e-12 72 20 14 496 3 gsiB Glutathione-binding protein GsiB Shigella flexneri
Q3Z3V3 6.42e-12 71 20 14 496 3 gsiB Glutathione-binding protein GsiB Shigella sonnei (strain Ss046)
P75797 8.74e-12 71 20 14 496 1 gsiB Glutathione-binding protein GsiB Escherichia coli (strain K12)
Q47622 1.56e-11 70 23 19 537 3 sapA Probable ABC transporter periplasmic-binding protein SapA Escherichia coli (strain K12)
Q9HVS1 2.91e-11 69 21 18 505 1 PA4500 Dipeptide-binding protein Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
A0A0H2ZGN2 6.4e-11 68 21 18 505 1 dppA3 Di/tripeptide-binding protein 3 Pseudomonas aeruginosa (strain UCBPP-PA14)
Q0T6D2 7.97e-11 68 20 15 498 3 gsiB Glutathione-binding protein GsiB Shigella flexneri serotype 5b (strain 8401)
P42061 2.02e-10 67 22 17 446 1 appA Oligopeptide-binding protein AppA Bacillus subtilis (strain 168)
P24141 4.08e-10 65 22 21 526 1 oppA Oligopeptide-binding protein OppA Bacillus subtilis (strain 168)
A0A0H2ZGV2 8.54e-10 64 20 19 515 1 dppA1 Di/tripeptide-binding protein 1 Pseudomonas aeruginosa (strain UCBPP-PA14)
A0A0H2ZI72 1.24e-09 64 20 11 450 1 dppA5 Probable di/tripeptide-binding protein 5 Pseudomonas aeruginosa (strain UCBPP-PA14)
P71370 2.43e-09 63 22 17 548 3 oppA Periplasmic oligopeptide-binding protein OppA Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q8FUX2 1.7e-08 60 22 9 296 3 BRA1090 Putative peptide-binding periplasmic protein BRA1090/BS1330_II1082 Brucella suis biovar 1 (strain 1330)
Q8YDG6 2.47e-08 60 22 9 296 3 BMEII0210 Putative peptide-binding periplasmic protein BMEII0210 Brucella melitensis biotype 1 (strain ATCC 23456 / CCUG 17765 / NCTC 10094 / 16M)
P26906 2.71e-08 60 22 21 517 1 dppE Dipeptide-binding protein DppE Bacillus subtilis (strain 168)
Q2YJK2 2.06e-07 57 22 9 296 3 BAB2_1049 Putative peptide-binding periplasmic protein BAB2_1049 Brucella abortus (strain 2308)
Q8VQK3 2.06e-07 57 22 9 296 3 BruAb2_1030 Putative peptide-binding periplasmic protein BruAb2_1030 Brucella abortus biovar 1 (strain 9-941)
Q2YKJ5 1.29e-06 54 24 8 293 3 BAB2_0664 Putative binding protein BAB2_0664 Brucella abortus (strain 2308)
Q577X5 1.29e-06 54 24 8 293 3 BruAb2_0648 Putative binding protein BruAb2_0648 Brucella abortus biovar 1 (strain 9-941)
Q8YC41 1.47e-06 54 24 8 293 3 BMEII0691 Putative binding protein BMEII0691 Brucella melitensis biotype 1 (strain ATCC 23456 / CCUG 17765 / NCTC 10094 / 16M)
Q8FW84 1.58e-06 54 24 8 293 3 BRA0576 Putative binding protein BRA0576/BS1330_II0571 Brucella suis biovar 1 (strain 1330)
Q46863 2.28e-06 53 25 8 239 1 ygiS Probable deoxycholate-binding periplasmic protein YgiS Escherichia coli (strain K12)
P23843 2.46e-06 53 22 21 540 1 oppA Periplasmic oligopeptide-binding protein OppA Escherichia coli (strain K12)
P77348 4.42e-06 53 22 20 539 1 mppA Periplasmic murein peptide-binding protein MppA Escherichia coli (strain K12)
P06202 1.61e-05 51 22 20 483 1 oppA Periplasmic oligopeptide-binding protein OppA Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P45285 0.000159 48 19 18 551 3 sapA Peptide transport periplasmic protein SapA Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q8FWN7 0.000339 47 20 18 440 3 BRA0409 Putative ABC transporter peptide-binding protein BRA0409/BS1330_II0406 Brucella suis biovar 1 (strain 1330)
Q2YK66 0.000339 47 20 18 440 3 BAB2_0812 Putative ABC transporter peptide-binding protein BAB2_0812 Brucella abortus (strain 2308)
Q577J8 0.000339 47 20 18 440 3 BruAb2_0792 Putative ABC transporter peptide-binding protein BruAb2_0792 Brucella abortus biovar 1 (strain 9-941)
A5VU91 0.000339 47 20 18 440 3 BOV_A0352 Putative ABC transporter peptide-binding protein BOV_A0352 Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512)
Q8YBP0 0.000366 47 20 18 440 3 BMEII0859 Putative ABC transporter peptide-binding protein BMEII0859 Brucella melitensis biotype 1 (strain ATCC 23456 / CCUG 17765 / NCTC 10094 / 16M)
A0A0H3JTL0 0.000788 45 19 14 469 1 cntA Metal-staphylopine-binding protein CntA Staphylococcus aureus (strain Mu50 / ATCC 700699)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS07165
Feature type CDS
Gene -
Product ABC transporter substrate-binding protein
Location 1567449 - 1569014 (strand: 1)
Length 1566 (nucleotides) / 521 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_963
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0747 Amino acid transport and metabolism (E) E ABC-type transport system, periplasmic component

Protein Sequence

MKTKLLSLLVMGALSAPVLAATPANTLIVVQGLDDIVSLDPAESNELSSIQTVPSLYQRIVQPNRDNPEINEPILVESWQAHPEQKSIVFKIKQDAKFASGNSVRPEDIIFSYQRAVTMNKSPAFILNVLGWKADNINTLLKKVSDKEIEVRWTADVSPDVVLNILSTPIASIVDEKLIAAHIKNNDFGNNWLKMNSAGSGAYKMRAYKPRQAIVLEANPLSPTGAPKIANIIIKNVPDPASRRLLIEKGDADIARDLGTDQTAALAGKPGIQILNIPSAEQVYMAFNTGSGNPLLSNPAFWQAARYLVDYKGITNDLMRGQYFIHQSFLPVGLPGALEDNPFSFDPQKAKDILAKAGITHARFTLDVENKVPYITVAQSIQASFAQAGVQVDLLPAAGSQVYSRVRARQHQAAIRFWIPDYFDAHSNASAFAYNDGQSNTVAWLNNWNIPELSKQTLVALNEADKAKRQSLYTEMQKELQRSSPYVFIDQGKNQIVLRDNVKGYAQGLNADMVYYDKVTK

Flanking regions ( +/- flanking 50bp)

TATTGACATAATAACGAAAGCGAGACTATTTCAGGGAGCGTCCAATGAAAGTGAAAACCAAATTATTATCATTACTTGTGATGGGTGCTCTCAGTGCCCCTGTATTGGCAGCAACACCCGCCAATACATTGATTGTAGTACAAGGCCTTGATGATATTGTTAGCCTTGATCCTGCCGAAAGTAACGAATTATCAAGTATTCAGACCGTACCAAGTTTATATCAACGTATTGTTCAGCCTAACCGTGACAATCCAGAAATTAACGAGCCAATTTTAGTCGAGAGTTGGCAGGCTCACCCTGAACAAAAATCTATCGTCTTTAAAATTAAACAGGATGCAAAATTTGCCTCCGGTAATAGCGTACGCCCAGAAGATATTATCTTCTCTTACCAGCGTGCAGTGACGATGAATAAATCCCCTGCTTTTATTTTAAATGTGCTAGGTTGGAAAGCAGATAATATTAATACCCTATTGAAAAAAGTCAGTGATAAAGAGATTGAAGTACGTTGGACAGCAGATGTTAGCCCTGATGTGGTACTTAACATCCTTTCTACACCAATCGCTTCTATTGTTGATGAGAAATTGATTGCCGCACATATTAAAAATAATGACTTTGGTAATAATTGGCTAAAAATGAATTCGGCTGGTAGTGGTGCTTATAAAATGCGTGCCTACAAACCTCGCCAAGCCATTGTGTTAGAAGCTAACCCTCTTTCACCGACCGGTGCGCCTAAGATAGCCAATATTATTATCAAAAATGTGCCCGATCCCGCTTCACGCCGTCTGTTAATTGAAAAAGGCGATGCGGATATTGCCCGTGACTTAGGTACAGACCAAACTGCAGCATTAGCAGGTAAACCGGGCATTCAAATTTTAAATATCCCTTCTGCTGAGCAAGTCTATATGGCGTTTAATACCGGTAGCGGAAATCCGCTTCTTAGCAATCCGGCATTTTGGCAAGCAGCGCGCTATTTGGTCGATTATAAAGGGATCACCAATGACTTAATGCGTGGGCAATATTTTATTCACCAAAGTTTCTTACCGGTGGGATTACCGGGGGCATTAGAAGATAATCCATTTAGTTTTGATCCGCAAAAAGCGAAAGATATCTTAGCAAAAGCAGGAATTACTCATGCACGTTTTACTCTCGATGTAGAAAACAAAGTTCCTTACATCACCGTTGCACAATCTATTCAAGCAAGCTTTGCACAAGCGGGTGTACAGGTTGATCTGTTACCTGCTGCCGGTAGTCAAGTTTATAGCCGAGTGAGAGCAAGGCAGCACCAAGCGGCGATCCGTTTTTGGATCCCCGACTATTTTGATGCTCACTCCAATGCTAGCGCTTTTGCCTATAATGACGGGCAATCAAATACCGTGGCTTGGTTAAATAATTGGAATATTCCTGAGTTAAGTAAACAAACACTCGTCGCCCTTAATGAAGCGGATAAGGCTAAACGTCAGTCCCTTTATACTGAAATGCAAAAAGAGCTACAACGCAGTTCACCTTACGTGTTTATCGACCAAGGCAAAAATCAGATTGTATTACGGGATAACGTGAAAGGTTATGCTCAAGGTCTAAATGCCGATATGGTCTATTACGACAAAGTCACTAAGTGATCATTTTCCTGCCGCCACTCACAATCATGTTATTGTGAGTGGTCTATTTT