Homologs in group_1269

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_07500 FBDBKF_07500 71.8 Morganella morganii S1 nirD nitrite reductase small subunit NirD
EHELCC_17170 EHELCC_17170 71.8 Morganella morganii S2 nirD nitrite reductase small subunit NirD
NLDBIP_13775 NLDBIP_13775 71.8 Morganella morganii S4 nirD nitrite reductase small subunit NirD
LHKJJB_09075 LHKJJB_09075 71.8 Morganella morganii S3 nirD nitrite reductase small subunit NirD
HKOGLL_08625 HKOGLL_08625 71.8 Morganella morganii S5 nirD nitrite reductase small subunit NirD
F4V73_RS13610 F4V73_RS13610 69.1 Morganella psychrotolerans nirD nitrite reductase small subunit NirD

Distribution of the homologs in the orthogroup group_1269

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1269

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0A229 2.05e-47 150 60 0 108 4 nirD Nitrite reductase (NADH) small subunit Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P0A230 2.05e-47 150 60 0 108 3 nirD Nitrite reductase (NADH) small subunit Salmonella typhi
P0A9I8 1.34e-46 148 59 0 108 1 nirD Nitrite reductase (NADH) small subunit Escherichia coli (strain K12)
P0A9I9 1.34e-46 148 59 0 108 3 nirD Nitrite reductase (NADH) small subunit Escherichia coli O157:H7
Q06458 6.07e-17 78 39 2 103 3 nasB Nitrite reductase [NAD(P)H] large subunit Klebsiella oxytoca

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS07155
Feature type CDS
Gene nirD
Product nitrite reductase small subunit NirD
Location 1564239 - 1564571 (strand: -1)
Length 333 (nucleotides) / 110 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_1269
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF13806 Rieske-like [2Fe-2S] domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG2146 Inorganic ion transport and metabolism (P)
Secondary metabolites biosynthesis, transport and catabolism (Q)		 PQ Ferredoxin subunit of nitrite reductase or a ring-hydroxylating dioxygenase

Kegg Ortholog Annotation(s)

Protein Sequence

MSQWIAVCQLDDITVGTGVCALVEQDQVAIFRPYQDERLYALSNIDPFAQASVLSRGLIAEHDNELYIVSPLKKQHFRLTDGYCLEDENYSITHYEVKVEGNTVSVRSRH

Flanking regions ( +/- flanking 50bp)

CGCGTGCATGAACGTATTGATATCAAAATGGTAACAGAGGAGACGCAATCATGAGTCAATGGATAGCGGTTTGCCAATTAGATGACATCACTGTGGGGACTGGCGTTTGTGCGCTGGTGGAGCAAGATCAGGTGGCTATTTTCCGTCCATACCAAGATGAACGGCTCTACGCATTAAGTAATATTGATCCCTTCGCGCAAGCGAGTGTTTTATCACGGGGATTAATTGCAGAGCATGACAATGAGTTATATATCGTCAGTCCACTGAAAAAGCAGCATTTTCGCTTAACAGATGGTTATTGCCTTGAAGATGAGAACTATTCAATTACTCATTATGAAGTCAAAGTCGAAGGCAATACCGTCAGTGTGCGTTCGCGTCATTGATAAAACCAATAAATAGGGGACCCAGATGGATTATTTTCCAATATTCTGTC