Homologs in group_238

Help

7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_01805 FBDBKF_01805 73.4 Morganella morganii S1 cydB cytochrome d ubiquinol oxidase subunit II
EHELCC_02275 EHELCC_02275 73.4 Morganella morganii S2 cydB cytochrome d ubiquinol oxidase subunit II
NLDBIP_01185 NLDBIP_01185 73.4 Morganella morganii S4 cydB cytochrome d ubiquinol oxidase subunit II
LHKJJB_00850 LHKJJB_00850 73.4 Morganella morganii S3 cydB cytochrome d ubiquinol oxidase subunit II
HKOGLL_00890 HKOGLL_00890 73.4 Morganella morganii S5 cydB cytochrome d ubiquinol oxidase subunit II
F4V73_RS04130 F4V73_RS04130 74.0 Morganella psychrotolerans cydB cytochrome d ubiquinol oxidase subunit II
PMI_RS11755 PMI_RS11755 61.8 Proteus mirabilis HI4320 cydB cytochrome d ubiquinol oxidase subunit II

Distribution of the homologs in the orthogroup group_238

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_238

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P26458 4.4e-38 142 31 13 367 1 appB Cytochrome bd-II ubiquinol oxidase subunit 2 Escherichia coli (strain K12)
P0ABK2 7.98e-37 139 27 10 365 1 cydB Cytochrome bd-I ubiquinol oxidase subunit 2 Escherichia coli (strain K12)
P0ABK3 7.98e-37 139 27 10 365 3 cydB Cytochrome bd-I ubiquinol oxidase subunit 2 Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0ABK4 7.98e-37 139 27 10 365 3 cydB Cytochrome bd-I ubiquinol oxidase subunit 2 Escherichia coli O157:H7
P94365 2.1e-36 137 29 7 343 3 cydB Cytochrome bd ubiquinol oxidase subunit 2 Bacillus subtilis (strain 168)
P45020 2.65e-34 132 29 12 365 3 HI_1075 Probable cytochrome oxidase subunit 2 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS06945
Feature type CDS
Gene cydB
Product cytochrome d ubiquinol oxidase subunit II
Location 1519722 - 1520729 (strand: 1)
Length 1008 (nucleotides) / 335 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_238
Orthogroup size 8
N. genomes 7

Actions

Genomic region

Domains

PF02322 Cytochrome bd terminal oxidase subunit II

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1294 Energy production and conversion (C) C Cytochrome bd-type quinol oxidase, subunit 2

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K00426 cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7] Oxidative phosphorylation
Two-component system		 Cytochrome bd ubiquinol oxidase

Protein Sequence

MGIDLPVIWFIIIVFSTLMYIVMDGFDLGIGMLYPFIKEREDRDLMMNTVAPVWDGNETWLVLGGAALFGAFPLAYSVILDALAMPLTIMLVALIFRGVAFEFRFKADDTHKVFWDNAFIVGSLLTTFMQGIVVGSIVQGLPIIDRTFAGSYFDWLSPFALFCGFGLVIAYSLLGCGWLIMKTQGHLQQSLYKVILPLTFVMLAVIAIVSLWTPLAQPAIAERWFSLPNIFFFLPVPLLVLYSAWLIIRAVKKKGHYLPFFASLAIIFLGFTGLGISIWPNIIPPAISFIDASAPPESQGFMLVGALFIIPIILVYTFWSYYVFRGKTNYEEGYH

Flanking regions ( +/- flanking 50bp)

ATATGCCTATATGTTAAAACTTATCCGCAAAGGTGCGCCGGAGGTTCAAGATGGGAATTGATTTACCCGTTATTTGGTTCATCATCATCGTATTTAGCACATTAATGTATATTGTGATGGATGGCTTCGATCTCGGCATTGGCATGCTCTATCCTTTTATAAAAGAGAGAGAAGATCGCGATTTAATGATGAATACTGTCGCCCCAGTATGGGATGGCAATGAAACATGGCTAGTTTTAGGTGGTGCGGCGCTATTTGGTGCGTTTCCTTTAGCGTATTCAGTGATCCTTGATGCTTTAGCCATGCCTTTAACTATCATGCTAGTTGCGCTTATTTTCAGGGGCGTTGCTTTTGAATTTCGCTTTAAAGCCGATGACACTCATAAAGTTTTTTGGGATAACGCCTTTATTGTCGGCTCTCTATTAACCACCTTTATGCAAGGTATAGTCGTCGGTAGTATTGTTCAAGGTTTACCCATTATTGACCGTACTTTTGCAGGAAGCTATTTTGATTGGCTATCACCCTTTGCCCTGTTTTGTGGCTTTGGTCTAGTCATTGCCTACTCACTGTTAGGGTGTGGCTGGCTCATTATGAAAACTCAAGGCCATTTACAACAGAGTTTGTATAAAGTGATCTTGCCATTAACGTTCGTTATGCTAGCAGTGATAGCCATAGTCAGTTTATGGACACCATTAGCACAACCGGCGATTGCTGAACGTTGGTTTTCACTACCCAATATTTTCTTTTTCTTACCTGTACCACTGCTAGTGTTATATAGCGCTTGGTTGATTATTCGCGCAGTAAAGAAAAAAGGTCATTACTTACCTTTCTTTGCTTCTCTAGCGATTATATTTCTTGGTTTTACTGGGCTAGGGATTAGTATCTGGCCAAATATTATACCGCCGGCAATTAGTTTTATCGATGCATCAGCACCACCGGAAAGCCAAGGTTTTATGCTCGTTGGTGCGCTATTTATCATTCCCATTATTCTCGTTTATACATTCTGGAGTTATTACGTATTCAGAGGAAAAACCAATTATGAAGAAGGCTATCACTGATCCGAACCCTGAAACAAAACCCTCATTACTGAAAAAATGGGGTTGGTTAA