Homologs in group_1003

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_05605 FBDBKF_05605 69.9 Morganella morganii S1 pspB envelope stress response membrane protein PspB
EHELCC_11985 EHELCC_11985 69.9 Morganella morganii S2 pspB envelope stress response membrane protein PspB
NLDBIP_12325 NLDBIP_12325 69.9 Morganella morganii S4 pspB envelope stress response membrane protein PspB
LHKJJB_12185 LHKJJB_12185 69.9 Morganella morganii S3 pspB envelope stress response membrane protein PspB
HKOGLL_10800 HKOGLL_10800 69.9 Morganella morganii S5 pspB envelope stress response membrane protein PspB
F4V73_RS03700 F4V73_RS03700 67.1 Morganella psychrotolerans pspB envelope stress response membrane protein PspB

Distribution of the homologs in the orthogroup group_1003

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1003

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0AFM9 1.08e-30 105 63 1 74 1 pspB Phage shock protein B Escherichia coli (strain K12)
P0AFN0 1.08e-30 105 63 1 74 3 pspB Phage shock protein B Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0AFN1 1.08e-30 105 63 1 74 3 pspB Phage shock protein B Escherichia coli O157:H7

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS06640
Feature type CDS
Gene pspB
Product envelope stress response membrane protein PspB
Location 1453492 - 1453722 (strand: -1)
Length 231 (nucleotides) / 76 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_1003
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF06667 Phage shock protein B

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K03970 phage shock protein B - -

Protein Sequence

MGYIFLGIPLTIFVLFILPIWLWLHYNSQKGGGKVQLTQQEMQRLSALVDKAQQMQERIKTLEDILDAEHPNWRQS

Flanking regions ( +/- flanking 50bp)

CTAATAAAGAGTAACAGCAAGCGTAATAACCATCTTATAAAGGATATGTAATGGGCTATATATTTCTGGGAATACCACTGACAATTTTTGTGTTATTTATTCTTCCTATTTGGTTATGGTTGCACTATAACAGCCAAAAAGGGGGAGGGAAGGTTCAGTTAACCCAACAAGAAATGCAGCGACTGAGCGCGCTGGTGGATAAAGCTCAGCAAATGCAGGAACGCATTAAGACATTAGAAGATATTCTTGATGCAGAACATCCTAACTGGAGGCAATCATAATGACGATGCAGAGCAAATCATTGTATCGCTTGCCACAAGAAGGCATGATC