Homologs in group_672

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_02410 FBDBKF_02410 48.6 Morganella morganii S1 padR PadR family transcriptional regulator
EHELCC_02880 EHELCC_02880 48.6 Morganella morganii S2 padR PadR family transcriptional regulator
NLDBIP_00580 NLDBIP_00580 48.6 Morganella morganii S4 padR PadR family transcriptional regulator
LHKJJB_01455 LHKJJB_01455 48.6 Morganella morganii S3 padR PadR family transcriptional regulator
HKOGLL_01495 HKOGLL_01495 48.6 Morganella morganii S5 padR PadR family transcriptional regulator
F4V73_RS04790 F4V73_RS04790 49.8 Morganella psychrotolerans - PadR family transcriptional regulator

Distribution of the homologs in the orthogroup group_672

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_672

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P64589 1.69e-25 103 32 7 224 4 yqjI Uncharacterized protein YqjI Shigella flexneri
P64588 1.69e-25 103 32 7 224 1 yqjI Transcriptional regulator YqjI Escherichia coli (strain K12)
C0H3S6 6.14e-05 44 34 2 88 4 ywzG Putative DNA-binding protein YwzG Bacillus subtilis (strain 168)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS05840
Feature type CDS
Gene -
Product PadR family transcriptional regulator
Location 1279288 - 1280106 (strand: 1)
Length 819 (nucleotides) / 272 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_672
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF03551 Transcriptional regulator PadR-like family

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1695 Transcription (K) K DNA-binding transcriptional regulator, PadR family

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K10947 PadR family transcriptional regulator - -

Protein Sequence

MMIQALHSLYQQHTDNGGHGIGRCGGKGKHRGQHHNGNNEHCCHGERGHHQEGHGKCCQQGEQSHEHNDHAEHGCCHGEKQQEHGKRHGRGCGAGKGKGRGQGRQLKRMFDHGDLRVLLLSMIAAKPSHGYEIIRGIDEASSGLYVPSPGVIYPTLTLLEEQDLVVANIAEKGRKNYSITPEGSAFLAENQETEKNIQNKLAYARDLSQNAGGVSEEIEFAVGKLKAVLRHKLVLKQLSVEKAQRIAFILNEAVEKIEAINEALISEVREDE

Flanking regions ( +/- flanking 50bp)

TTATATTGGTCATCAATGATTTCGATATATCTAAAAAATGAGGGAATATTATGATGATCCAAGCGTTACATTCGCTTTATCAACAACACACCGATAATGGTGGTCATGGCATCGGACGTTGTGGTGGTAAAGGTAAACACAGAGGACAACACCACAATGGCAATAATGAACATTGTTGTCATGGTGAAAGAGGCCATCACCAAGAAGGTCATGGCAAATGTTGCCAACAGGGTGAGCAAAGTCATGAGCATAATGATCATGCCGAACATGGCTGCTGTCACGGTGAAAAACAGCAAGAGCATGGTAAACGACATGGCCGAGGTTGTGGTGCTGGTAAAGGAAAAGGAAGAGGCCAAGGTCGTCAATTAAAACGTATGTTTGACCATGGTGATTTACGTGTCCTTTTGTTGAGTATGATCGCGGCAAAACCTAGCCATGGGTATGAAATTATTCGAGGAATAGATGAAGCATCTTCAGGACTATATGTACCAAGTCCAGGGGTTATATATCCAACACTGACACTATTAGAAGAGCAAGATTTAGTTGTTGCTAATATCGCTGAAAAAGGCCGTAAAAATTATAGTATTACGCCAGAAGGTTCAGCATTTTTAGCAGAAAACCAAGAAACAGAAAAAAATATTCAAAATAAACTGGCTTATGCACGTGATTTATCACAAAACGCAGGGGGAGTTTCTGAGGAAATCGAATTTGCGGTAGGAAAATTAAAAGCGGTATTACGTCATAAGTTAGTATTGAAACAACTTTCTGTAGAAAAAGCGCAACGCATTGCTTTTATACTTAATGAAGCAGTCGAAAAAATAGAAGCCATTAATGAGGCATTGATCTCTGAGGTAAGGGAAGATGAATAAAACAGAAACACCATTACGGAACAGAAGCAAAAATAATGATATTGAAAAAG