Homologs in group_1601

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_10445 FBDBKF_10445 61.1 Morganella morganii S1 iorA TPP-dependent indolepyruvate ferredoxin oxidoreductase, alpha subunit
EHELCC_14780 EHELCC_14780 61.1 Morganella morganii S2 iorA TPP-dependent indolepyruvate ferredoxin oxidoreductase, alpha subunit
NLDBIP_14610 NLDBIP_14610 61.1 Morganella morganii S4 iorA TPP-dependent indolepyruvate ferredoxin oxidoreductase, alpha subunit
LHKJJB_14735 LHKJJB_14735 61.1 Morganella morganii S3 iorA TPP-dependent indolepyruvate ferredoxin oxidoreductase, alpha subunit
HKOGLL_13355 HKOGLL_13355 61.1 Morganella morganii S5 iorA TPP-dependent indolepyruvate ferredoxin oxidoreductase, alpha subunit
F4V73_RS14145 F4V73_RS14145 59.7 Morganella psychrotolerans - 4Fe-4S binding protein

Distribution of the homologs in the orthogroup group_1601

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1601

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P00196 3.05e-05 44 42 1 56 1 None Ferredoxin Clostridium butyricum
P00196 8.25e-05 43 47 0 42 1 None Ferredoxin Clostridium butyricum
Q57953 5.06e-05 43 38 0 47 3 MJ0533 Uncharacterized ferredoxin MJ0533 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
P00197 6.71e-05 43 50 0 42 1 None Ferredoxin Clostridium sp. (strain M-E)
P81293 7.17e-05 47 23 8 246 4 MJ0514.2 Uncharacterized polyferredoxin-like protein MJ0514.2 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
P56256 0.000138 45 26 4 129 4 ysaA Putative electron transport protein YsaA Escherichia coli (strain K12)
P80168 0.000182 42 41 1 56 1 CLOST_2292 Ferredoxin Acetoanaerobium sticklandii (strain ATCC 12662 / DSM 519 / JCM 1433 / CCUG 9281 / NCIMB 10654 / HF)
Q8TM02 0.000216 46 35 0 53 1 hdrA2 Ferredoxin/F(420)H(2)-dependent CoB-CoM heterodisulfide reductase subunit A Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A)
P82853 0.000248 42 40 0 42 3 Ta0517 Probable ferredoxin TA0517 Thermoplasma acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165)
P22846 0.000301 41 46 0 41 1 fer Ferredoxin Clostridium perfringens (strain 13 / Type A)
P22846 0.000623 40 42 0 42 1 fer Ferredoxin Clostridium perfringens (strain 13 / Type A)
P00195 0.00042 41 45 0 42 1 None Ferredoxin Clostridium pasteurianum
Q8Q0T0 0.00049 45 35 0 53 3 hdrA Ferredoxin:CoB-CoM heterodisulfide reductase subunit A Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88)
Q8TQQ5 0.000515 42 40 0 49 4 MA_1485 Ferredoxin Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A)
Q00388 0.000593 44 24 9 262 4 vhuB Polyferredoxin protein VhuB Methanococcus voltae
P00200 0.000658 40 34 1 58 1 None Ferredoxin Thermoanaerobacterium thermosaccharolyticum
P44101 0.000668 43 48 1 47 4 HI_1043 Uncharacterized protein HI_1043 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q4UJX3 0.000794 41 34 1 63 3 fdxA Ferredoxin Rickettsia felis (strain ATCC VR-1525 / URRWXCal2)
P00198 0.001 40 37 1 56 1 fdxA 4Fe-4S ferredoxin FdxA Gottschalkia acidurici (strain ATCC 7906 / DSM 604 / BCRC 14475 / CIP 104303 / KCTC 5404 / NCIMB 10678 / 9a)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS05825
Feature type CDS
Gene -
Product 4Fe-4S binding protein
Location 1274547 - 1275431 (strand: 1)
Length 885 (nucleotides) / 294 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_1601
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF12838 4Fe-4S dicluster domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG2221 Inorganic ion transport and metabolism (P) P Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits

Protein Sequence

MRRFIRVDLPPEPIINDKCVRKRLKQSLCDSCSKVCPVDAITFSLLNVEIDNERCFQCGNCLFTCPVDAIENISPHERSFQDNLLVINHDEPLASIEELLVWHRQYQIRGMKIAEPLVDKWLPILAQLNLQLKTLQEPIWQLVLVEPEPVDSGRRFMLFRQKLDEKPLNKGHVKTGLNARKQLYPQDSWFHIQLDKESCILCSACAKVCDEGAITIEDNRFIIDEKRCTGCMNCQVVCFPKSIKVVEQIAKNSTPTHYHYYDAQCDKCRLAFFAWEPNATLCPICTQHQKQGWL

Flanking regions ( +/- flanking 50bp)

AACCGATTTGCATTTTTTATTGTTAAGTAATAGTAATGGAGTCATGAAGTATGAGGCGTTTTATTAGGGTAGATCTTCCTCCTGAACCTATCATTAATGATAAATGTGTTAGGAAACGCCTCAAACAAAGCCTTTGTGATAGCTGTTCAAAAGTCTGTCCTGTGGACGCTATCACTTTTAGTCTTTTGAACGTTGAAATAGATAATGAGCGTTGTTTCCAATGCGGTAATTGTCTATTTACTTGCCCTGTTGACGCTATAGAAAATATCTCCCCCCATGAACGTAGCTTTCAAGATAATCTATTAGTCATTAATCATGATGAACCACTGGCCAGTATTGAAGAGCTTTTGGTTTGGCATCGACAATATCAAATACGCGGTATGAAAATAGCGGAACCCTTGGTTGATAAGTGGCTGCCGATACTCGCACAACTTAATTTGCAATTAAAAACCTTACAAGAGCCTATTTGGCAATTAGTTTTAGTGGAGCCTGAACCGGTCGATAGTGGTCGTCGCTTTATGCTATTTCGACAAAAATTAGATGAAAAGCCACTTAATAAAGGTCACGTAAAAACAGGATTAAATGCAAGGAAACAGCTTTATCCGCAAGATAGCTGGTTCCATATTCAATTAGATAAAGAAAGTTGTATTCTTTGTTCTGCATGTGCCAAGGTGTGTGATGAAGGTGCAATCACAATCGAAGATAATCGCTTTATCATTGATGAAAAACGTTGCACCGGTTGTATGAACTGCCAAGTTGTCTGTTTTCCAAAATCAATAAAAGTCGTAGAACAAATTGCTAAAAATAGCACACCGACACATTACCATTATTATGATGCACAATGTGATAAATGCCGCCTTGCTTTTTTTGCTTGGGAGCCTAATGCCACCTTATGTCCGATTTGTACTCAGCATCAAAAACAGGGATGGCTATAACAGTGTTTATAATTTGTTCTATGCAAAAATAAATTTATCTCAATAACATC