Homologs in group_640

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_02090 FBDBKF_02090 63.9 Morganella morganii S1 mepM murein DD-endopeptidase MepM
EHELCC_02560 EHELCC_02560 63.9 Morganella morganii S2 mepM murein DD-endopeptidase MepM
NLDBIP_00900 NLDBIP_00900 63.9 Morganella morganii S4 mepM murein DD-endopeptidase MepM
LHKJJB_01135 LHKJJB_01135 63.9 Morganella morganii S3 mepM murein DD-endopeptidase MepM
HKOGLL_01175 HKOGLL_01175 63.9 Morganella morganii S5 mepM murein DD-endopeptidase MepM
F4V73_RS04455 F4V73_RS04455 61.0 Morganella psychrotolerans mepM murein DD-endopeptidase MepM

Distribution of the homologs in the orthogroup group_640

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_640

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0AFT1 0.0 568 62 5 445 3 mepM Murein DD-endopeptidase MepM Shigella flexneri
P0AFS9 0.0 568 62 5 445 1 mepM Murein DD-endopeptidase MepM Escherichia coli (strain K12)
P0AFT0 0.0 568 62 5 445 3 mepM Murein DD-endopeptidase MepM Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P44693 1.25e-100 311 43 6 398 3 HI_0409 Uncharacterized metalloprotease HI_0409 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q8K9M4 3.02e-92 288 39 4 346 3 BUsg_310 Uncharacterized metalloprotease BUsg_310 Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
Q89AI9 3.01e-59 201 36 3 250 3 bbp_296 Uncharacterized metalloprotease bbp_296 Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp)
O64046 4.78e-17 87 40 3 117 3 yomI Probable tape measure protein Bacillus phage SPbeta
O31976 4.86e-17 87 40 3 117 3 yomI SPbeta prophage-derived uncharacterized transglycosylase YomI Bacillus subtilis (strain 168)
A0A0H3K6J4 2.1e-14 77 41 3 102 3 lytM Glycyl-glycine endopeptidase LytM Staphylococcus aureus (strain Newman)
Q5HJ99 2.1e-14 77 41 3 102 3 lytM Glycyl-glycine endopeptidase LytM Staphylococcus aureus (strain COL)
O33599 2.1e-14 77 41 3 102 1 lytM Glycyl-glycine endopeptidase LytM Staphylococcus aureus (strain NCTC 8325 / PS 47)
Q6GK35 2.16e-14 77 41 3 102 3 lytM Glycyl-glycine endopeptidase LytM Staphylococcus aureus (strain MRSA252)
Q7A7T0 2.28e-14 77 41 3 102 3 lytM Glycyl-glycine endopeptidase LytM Staphylococcus aureus (strain N315)
Q99WV0 2.28e-14 77 41 3 102 3 lytM Glycyl-glycine endopeptidase LytM Staphylococcus aureus (strain Mu50 / ATCC 700699)
Q8NYG1 2.33e-14 77 41 3 102 3 lytM Glycyl-glycine endopeptidase LytM Staphylococcus aureus (strain MW2)
Q6GCJ6 2.33e-14 77 41 3 102 3 lytM Glycyl-glycine endopeptidase LytM Staphylococcus aureus (strain MSSA476)
O05156 3.54e-13 73 41 2 102 1 None Glycyl-glycine endopeptidase ALE-1 Staphylococcus capitis
P10547 1.03e-11 70 43 2 90 1 lss Lysostaphin Staphylococcus simulans
P10548 1.05e-11 70 43 2 90 3 lss Lysostaphin Staphylococcus staphylolyticus
Q46798 1.33e-11 67 36 3 112 3 ygeR Uncharacterized lipoprotein YgeR Escherichia coli (strain K12)
P47764 2.1e-11 63 38 2 92 3 nlpD Lipoprotein NlpD (Fragment) Yersinia enterocolitica
P0ADA4 2.19e-11 68 40 3 99 3 nlpD Murein hydrolase activator NlpD Shigella flexneri
P0ADA3 2.19e-11 68 40 3 99 1 nlpD Murein hydrolase activator NlpD Escherichia coli (strain K12)
Q56131 2.59e-11 68 40 3 99 3 nlpD Murein hydrolase activator NlpD Salmonella typhi
P40827 2.74e-11 68 40 3 99 3 nlpD Murein hydrolase activator NlpD Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P39700 2.74e-11 68 40 3 99 2 nlpD Murein hydrolase activator NlpD Salmonella dublin
P45682 1.07e-09 62 40 4 105 3 PA3623 Lipoprotein NlpD/LppB homolog Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
A0A0H3C9Q9 7.23e-09 61 35 2 89 3 dipM Cell division protein DipM Caulobacter vibrioides (strain NA1000 / CB15N)
P37690 1.28e-06 53 34 0 93 1 envC Murein hydrolase activator EnvC Escherichia coli (strain K12)
P44833 4.6e-06 52 34 4 105 3 lppB Outer membrane antigenic lipoprotein B Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P36685 5.46e-06 52 37 3 89 3 lppB Outer membrane antigenic lipoprotein B (Fragment) Histophilus somni
P57493 3.48e-05 49 30 2 94 3 BU418 Protein NlpD/LppB homolog Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS)
P71044 6.18e-05 48 29 2 99 1 spoIIQ Stage II sporulation protein Q Bacillus subtilis (strain 168)
P44864 6.94e-05 48 33 0 93 4 HI_0756 Uncharacterized protein HI_0756 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS05565
Feature type CDS
Gene mepM
Product murein DD-endopeptidase MepM
Location 1213205 - 1214533 (strand: 1)
Length 1329 (nucleotides) / 442 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_640
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF01476 LysM domain
PF01551 Peptidase family M23
PF08525 Opacity-associated protein A N-terminal motif
PF19425 Csd3 second domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0739 Cell wall/membrane/envelope biogenesis (M) M Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K19304 murein DD-endopeptidase [EC:3.4.24.-] - -

Protein Sequence

MQQKTRSIAQVYLNLPLPHKIMLGSLTAATLAVAIWRPVVLHTEQSREVPISIQTPLTTQGENTDDIITDSSDQLTDEGLVGADDGVDTSTAVAQVPHTYIVSSGDSLSSILTQFGIDSADIATLSNQNKDLRNLKIGQPISWKLDDDGLLQELSWGVSRRETRVYTRTETGFTEAKEFQKGEWKNSVTTGVIRGSFSASATNAGLTNAEARAVTKALQWQLDFRKLQSGDKFSALFSREVLDGRTEQSELIGVRLRSGGKDYYAFLAEDGRYYDSQAGGLERGFMRFPTVKQFRVSSQFNPRRINPVTGRVAPHKGVDFAMPVGTPVLATGDGEVIVSKYSGAAGNFIAIRHGSQYTTRYMHLRQLLVKPGQRVKRGDRIALSGNTGRSTGPHLHYELWINQQAVNPLTAKLPRADGLTGKEKREYLAKVKEIMPQLTLDN

Flanking regions ( +/- flanking 50bp)

CTAACCAATATGCGAGCTGCCTGAATGAAACACAATAAGGAATTAAGAACGTGCAGCAGAAGACGAGATCCATTGCACAGGTATATTTAAATTTACCCTTACCACATAAAATTATGCTTGGTTCGTTAACTGCAGCAACACTGGCTGTCGCAATATGGCGGCCAGTTGTGCTTCACACCGAACAAAGCAGAGAAGTTCCTATCAGTATTCAGACTCCCCTAACAACCCAAGGGGAAAACACCGACGATATTATTACCGACAGTAGTGATCAGCTAACAGATGAAGGACTTGTAGGTGCTGATGATGGTGTCGATACTAGCACCGCAGTGGCACAGGTTCCTCATACTTATATTGTCTCCAGTGGAGATTCATTAAGTTCGATATTAACGCAATTTGGTATCGACTCAGCTGATATTGCAACGCTCTCCAATCAAAATAAAGATCTCAGAAACCTTAAAATAGGCCAACCAATAAGTTGGAAACTTGATGATGATGGTTTATTGCAAGAGTTAAGTTGGGGCGTTTCTCGCCGAGAAACTCGTGTTTATACGCGTACGGAAACAGGTTTTACTGAAGCAAAAGAGTTCCAAAAAGGCGAATGGAAAAATAGTGTGACCACAGGGGTTATCCGTGGTAGTTTCTCTGCAAGTGCAACAAATGCTGGCTTAACTAACGCAGAAGCTCGCGCAGTGACTAAAGCTTTGCAATGGCAATTAGACTTTAGAAAATTACAAAGTGGTGATAAATTCTCAGCCCTTTTTTCTCGTGAAGTCTTAGATGGTCGTACCGAACAGAGCGAACTTATTGGTGTGCGGTTACGAAGTGGTGGTAAAGATTACTATGCTTTTCTTGCTGAAGATGGCCGCTACTATGATAGCCAAGCAGGTGGTTTAGAACGTGGTTTTATGCGTTTTCCAACGGTAAAACAGTTTAGAGTCTCTTCTCAATTTAATCCTCGCCGTATCAATCCTGTCACAGGCCGTGTTGCACCGCATAAAGGGGTTGATTTTGCTATGCCTGTTGGTACGCCTGTTTTAGCTACAGGAGATGGTGAAGTCATTGTCTCTAAATACAGTGGTGCAGCAGGTAATTTTATTGCTATCCGTCATGGTAGCCAATATACCACTCGTTATATGCACTTACGCCAACTGTTAGTCAAACCGGGACAACGTGTAAAACGAGGTGATCGCATTGCACTATCCGGAAATACAGGGCGCTCCACAGGGCCACACTTACATTATGAATTATGGATCAACCAACAAGCAGTTAATCCATTAACAGCTAAATTACCTCGTGCAGATGGCCTAACAGGCAAAGAGAAGCGTGAATACTTAGCTAAAGTAAAAGAGATCATGCCTCAATTAACGTTAGATAATTGACATTAAACAAGAAGTTAAAGACATAAAAGCGGATGATTGATATCATCCGT