Homologs in group_4548

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0 homologs were identified in 0 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product

Distribution of the homologs in the orthogroup group_4548

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_4548

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P18103 2.8e-14 70 37 5 122 3 fanC K99 fimbrial protein Escherichia coli
P25394 9.54e-14 68 30 5 176 3 fedA F107 fimbrial protein Escherichia coli
P21413 8.61e-05 44 40 2 66 3 fasA Fimbrial protein 987P Escherichia coli

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS05160
Feature type CDS
Gene -
Product fimbrial protein
Location 1127562 - 1128080 (strand: 1)
Length 519 (nucleotides) / 172 (amino acids)
In genomic island -

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_4548
Orthogroup size 1
N. genomes 1

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Genomic region

Domains

PF00419 Fimbrial protein

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3539 Cell motility (N) N Pilin (type 1 fimbrial protein)

Protein Sequence

MKKLLLPLVMSSALFSGYTLANTGEVQFIGAVTSETCDIDTEIGGLVKSTIDLGKMTTADTNGKYVEFELVPRTDECLKKTSGQVGWQSAGFTNSGLANMKGTAGGVSIQLTAINSTTPNQDVTYNNQSVDFGNGNDPIGNMKFKARMTATAGQTVTEGTVISSATYAVAYK

Flanking regions ( +/- flanking 50bp)

ATTCTGATTTAATTGTTGTTAATTAATATTTAATATATGGGGAAGTTTAAATGAAAAAATTATTATTACCTTTAGTCATGAGCAGTGCATTATTTAGTGGATATACATTAGCTAATACCGGTGAAGTTCAATTTATTGGTGCGGTTACGTCGGAAACGTGTGATATTGATACAGAAATTGGTGGTTTAGTTAAATCAACAATCGATTTGGGTAAAATGACCACTGCAGATACCAATGGTAAATATGTTGAATTTGAATTAGTCCCTCGTACGGATGAATGCCTGAAAAAAACCAGTGGCCAAGTTGGTTGGCAAAGTGCAGGTTTTACTAATTCAGGTCTTGCTAATATGAAAGGTACTGCCGGTGGTGTATCTATTCAATTAACAGCGATTAATTCAACCACACCTAATCAGGATGTAACTTATAATAACCAAAGTGTTGATTTTGGTAATGGTAATGATCCAATTGGTAATATGAAATTTAAAGCAAGAATGACAGCAACGGCAGGTCAAACTGTTACAGAGGGTACTGTAATTTCAAGCGCAACTTATGCAGTAGCTTATAAATAATGTTTCATTATTTAATTTTATAATGTCTATTATCAATGTAGTTACTTTTA