Homologs in group_62

Help

12 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_02505 FBDBKF_02505 58.2 Morganella morganii S1 roxA Ribosomal protein L16 Arg81 hydroxylase, contains JmjC domain
FBDBKF_14585 FBDBKF_14585 79.6 Morganella morganii S1 roxA Ribosomal protein L16 Arg81 hydroxylase, contains JmjC domain
EHELCC_02975 EHELCC_02975 58.2 Morganella morganii S2 roxA Ribosomal protein L16 Arg81 hydroxylase, contains JmjC domain
EHELCC_15390 EHELCC_15390 79.6 Morganella morganii S2 roxA Ribosomal protein L16 Arg81 hydroxylase, contains JmjC domain
NLDBIP_00485 NLDBIP_00485 58.2 Morganella morganii S4 roxA Ribosomal protein L16 Arg81 hydroxylase, contains JmjC domain
NLDBIP_15920 NLDBIP_15920 79.6 Morganella morganii S4 roxA Ribosomal protein L16 Arg81 hydroxylase, contains JmjC domain
LHKJJB_01550 LHKJJB_01550 58.2 Morganella morganii S3 roxA Ribosomal protein L16 Arg81 hydroxylase, contains JmjC domain
LHKJJB_15920 LHKJJB_15920 79.6 Morganella morganii S3 roxA Ribosomal protein L16 Arg81 hydroxylase, contains JmjC domain
HKOGLL_01590 HKOGLL_01590 58.2 Morganella morganii S5 roxA Ribosomal protein L16 Arg81 hydroxylase, contains JmjC domain
HKOGLL_15040 HKOGLL_15040 79.6 Morganella morganii S5 roxA Ribosomal protein L16 Arg81 hydroxylase, contains JmjC domain
F4V73_RS02440 F4V73_RS02440 60.6 Morganella psychrotolerans - cupin domain-containing protein
F4V73_RS07380 F4V73_RS07380 78.8 Morganella psychrotolerans - cupin domain-containing protein

Distribution of the homologs in the orthogroup group_62

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_62

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P27431 0.0 545 69 0 372 1 roxA Ribosomal protein uL16 3-hydroxylase Escherichia coli (strain K12)
P44683 4.74e-45 162 30 10 347 1 HI_0396 Probable ribosomal oxygenase HI_0396 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
A3KP59 1.9e-06 53 24 7 207 2 riox1 Ribosomal oxygenase 1 Danio rerio
B4GUZ2 2.3e-06 53 22 5 213 3 GL12933 Bifunctional lysine-specific demethylase and histidyl-hydroxylase NO66 Drosophila persimilis
B3NU20 4.53e-06 52 38 2 83 3 GG18702 Bifunctional lysine-specific demethylase and histidyl-hydroxylase NO66 Drosophila erecta
Q9H6W3 5.53e-06 52 36 2 72 1 RIOX1 Ribosomal oxygenase 1 Homo sapiens
A5PK74 5.98e-06 52 36 2 72 2 RIOX1 Ribosomal oxygenase 1 Bos taurus
Q16W06 9.51e-06 51 25 9 206 3 AAEL009382 Bifunctional lysine-specific demethylase and histidyl-hydroxylase NO66 Aedes aegypti
B4Q068 1.71e-05 50 38 2 77 3 GE16340 Bifunctional lysine-specific demethylase and histidyl-hydroxylase NO66 Drosophila yakuba
A8QFQ3 2.05e-05 50 33 4 87 3 Bm1_53875 Bifunctional lysine-specific demethylase and histidyl-hydroxylase NO66 Brugia malayi
Q8CFC1 2.19e-05 50 27 12 207 2 Riox2 Ribosomal oxygenase 2 Rattus norvegicus
D3ZU57 2.19e-05 50 34 2 75 1 Riox1 Ribosomal oxygenase 1 Rattus norvegicus
B5DUH6 2.2e-05 50 34 3 83 3 GA27866 Bifunctional lysine-specific demethylase and histidyl-hydroxylase NO66 Drosophila pseudoobscura pseudoobscura
Q9JJF3 2.84e-05 49 34 2 75 1 Riox1 Ribosomal oxygenase 1 Mus musculus
P46327 6.09e-05 48 24 10 229 1 yxbC Uncharacterized protein YxbC Bacillus subtilis (strain 168)
Q5ZMM1 8.35e-05 48 25 9 208 2 RIOX1 Ribosomal oxygenase 1 Gallus gallus
B4M7P8 0.000101 48 35 3 79 3 GJ17031 Bifunctional lysine-specific demethylase and histidyl-hydroxylase NO66 Drosophila virilis
B4NP88 0.000109 48 33 4 89 3 GK15670 Bifunctional lysine-specific demethylase and histidyl-hydroxylase NO66 Drosophila willistoni
B4JMQ2 0.000132 47 33 3 90 3 GH24285 Bifunctional lysine-specific demethylase and histidyl-hydroxylase NO66 Drosophila grimshawi
O01658 0.000138 47 27 6 122 3 jmjc-1 Bifunctional lysine-specific demethylase and histidyl-hydroxylase NO66 Caenorhabditis elegans
B4R4H1 0.000147 47 36 3 80 3 GD16684 Bifunctional lysine-specific demethylase and histidyl-hydroxylase NO66 Drosophila simulans
A8XEA2 0.000153 47 31 4 86 3 jmjc-1 Bifunctional lysine-specific demethylase and histidyl-hydroxylase NO66 Caenorhabditis briggsae
B0WMG3 0.00021 47 29 1 75 3 CPIJ008401 Bifunctional lysine-specific demethylase and histidyl-hydroxylase NO66 Culex quinquefasciatus
Q54K96 0.000441 45 32 3 85 3 jcdg Bifunctional lysine-specific demethylase and histidyl-hydroxylase NO66 Dictyostelium discoideum
Q7K4H4 0.0005 45 35 1 77 1 NO66 Bifunctional lysine-specific demethylase and histidyl-hydroxylase NO66 Drosophila melanogaster
B3MSI4 0.000574 45 35 4 89 3 GF20792 Bifunctional lysine-specific demethylase and histidyl-hydroxylase NO66 Drosophila ananassae

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS04340
Feature type CDS
Gene -
Product cupin domain-containing protein
Location 974872 - 975993 (strand: -1)
Length 1122 (nucleotides) / 373 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_62
Orthogroup size 13
N. genomes 7

Actions

Genomic region

Domains

PF08007 JmjC domain
PF20514 ROXA-like winged helix

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG2850 Translation, ribosomal structure and biogenesis (J) J Ribosomal protein L16 Arg81 hydroxylase, contains JmjC domain

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K18850 50S ribosomal protein L16 3-hydroxylase [EC:1.14.11.47] - -

Protein Sequence

MDYKLNLDWQSFLESHWQKRPLLIKNGFSGFIDPLSPDELAGLAMEDEVDSRLVSCQDGQWGVKHGPFEHFEGLGDKDWSLLVQAVDHWHFPSAALMKPFRVLPDWRIDDLMISYSVPGGGVGPHLDQYDVFIIQGQGRRRWRVGEKIPMKQHCPHPDLLQVDPFDAIIDEELEPGDILYIPPGFPHEGYAIEESLNYSVGFRAPNARELFSGFADYVLANDLGSYRYSDPDLTPRDNPALVQHQELNKLHDMMEDLLAQPEVFRHWFGEFISQSRHELDLAIPEPLYENAEIHDLLQQGEQLHRLNGIRALRVGDSCFVNGELMDTHHIEAADALCQYDCIDKQHLGDALADPKFIRLLTHLVNQGYWYFED

Flanking regions ( +/- flanking 50bp)

GTAATTCATTATATGATATTTTTAGGCTTCCCAAATTCAGGAAATACACAATGGACTATAAACTTAATTTAGATTGGCAATCATTTTTAGAAAGCCATTGGCAAAAACGTCCTTTATTAATCAAAAACGGCTTCTCTGGTTTTATTGATCCTTTATCTCCTGATGAACTTGCGGGTCTTGCAATGGAAGATGAAGTGGATAGCCGTCTTGTGAGTTGTCAAGATGGGCAGTGGGGAGTTAAACATGGGCCTTTTGAGCACTTTGAAGGTTTGGGCGATAAAGATTGGTCGTTATTAGTTCAAGCGGTCGATCACTGGCATTTTCCAAGTGCGGCATTGATGAAACCTTTTCGTGTGTTGCCCGATTGGCGTATTGATGATTTGATGATCTCTTACTCTGTTCCCGGAGGCGGTGTGGGCCCTCATCTTGATCAATATGACGTATTTATTATTCAAGGGCAAGGTCGTCGTCGTTGGCGTGTGGGTGAGAAAATCCCAATGAAACAGCACTGCCCTCACCCGGATTTACTTCAAGTTGATCCTTTTGATGCCATTATCGATGAAGAATTAGAGCCGGGTGATATTCTGTATATTCCACCTGGATTTCCTCATGAAGGTTATGCCATTGAAGAATCACTAAACTATTCTGTTGGCTTTAGAGCACCTAATGCACGAGAGCTATTTAGCGGTTTTGCTGACTATGTTTTAGCAAATGACTTAGGAAGCTACCGTTACAGTGATCCTGATCTTACTCCTCGAGATAATCCGGCATTAGTCCAGCATCAAGAATTAAATAAGTTGCATGATATGATGGAAGACTTACTTGCCCAACCCGAAGTATTCCGTCATTGGTTTGGGGAGTTTATTTCTCAATCTCGCCATGAACTTGACTTGGCCATTCCTGAACCTTTATATGAAAATGCTGAGATCCACGATTTACTGCAACAAGGTGAACAACTTCATCGTTTAAACGGTATTCGCGCACTGCGTGTTGGTGATAGTTGCTTTGTTAATGGTGAATTAATGGATACTCATCATATTGAAGCTGCAGATGCCCTTTGCCAATATGATTGTATTGATAAACAACATTTAGGTGATGCTTTAGCAGATCCAAAATTTATACGCTTATTGACGCATCTTGTTAACCAAGGCTATTGGTATTTTGAAGATTAAGTATAAATAAACTATTTTTATACAAACACACCCAGCTAATTATAGCTGGG