Homologs in group_1993

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_14670 FBDBKF_14670 45.6 Morganella morganii S1 lpoB penicillin-binding protein activator LpoB
EHELCC_15475 EHELCC_15475 45.6 Morganella morganii S2 lpoB penicillin-binding protein activator LpoB
NLDBIP_16005 NLDBIP_16005 45.6 Morganella morganii S4 lpoB penicillin-binding protein activator LpoB
LHKJJB_15835 LHKJJB_15835 45.6 Morganella morganii S3 lpoB penicillin-binding protein activator LpoB
HKOGLL_14955 HKOGLL_14955 45.6 Morganella morganii S5 lpoB penicillin-binding protein activator LpoB
F4V73_RS07465 F4V73_RS07465 48.4 Morganella psychrotolerans lpoB penicillin-binding protein activator LpoB

Distribution of the homologs in the orthogroup group_1993

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1993

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
B4EVE5 7.63e-140 390 100 0 193 3 lpoB Penicillin-binding protein activator LpoB Proteus mirabilis (strain HI4320)
D3VIE0 2.33e-63 197 53 4 194 3 lpoB Penicillin-binding protein activator LpoB Xenorhabdus nematophila (strain ATCC 19061 / DSM 3370 / CCUG 14189 / LMG 1036 / NCIMB 9965 / AN6)
Q7N395 2.86e-52 169 47 1 193 3 lpoB Penicillin-binding protein activator LpoB Photorhabdus laumondii subsp. laumondii (strain DSM 15139 / CIP 105565 / TT01)
C6DKS0 7.44e-48 157 46 2 195 3 lpoB Penicillin-binding protein activator LpoB Pectobacterium carotovorum subsp. carotovorum (strain PC1)
E0SHN8 7.81e-46 152 42 4 198 3 lpoB Penicillin-binding protein activator LpoB Dickeya dadantii (strain 3937)
A8GD35 1.58e-42 144 44 2 196 3 lpoB Penicillin-binding protein activator LpoB Serratia proteamaculans (strain 568)
Q3Z312 1.1e-39 137 36 3 210 3 lpoB Penicillin-binding protein activator LpoB Shigella sonnei (strain Ss046)
P0AB38 1.1e-39 137 36 3 210 1 lpoB Penicillin-binding protein activator LpoB Escherichia coli (strain K12)
P0AB39 1.1e-39 137 36 3 210 3 lpoB Penicillin-binding protein activator LpoB Escherichia coli O157:H7
C4K8P0 1.16e-39 137 39 3 196 3 lpoB Penicillin-binding protein activator LpoB Hamiltonella defensa subsp. Acyrthosiphon pisum (strain 5AT)
Q7CJ14 5.83e-38 132 41 1 193 3 lpoB Penicillin-binding protein activator LpoB Yersinia pestis
D0JWX6 5.83e-38 132 41 1 193 3 lpoB Penicillin-binding protein activator LpoB Yersinia pestis (strain D182038)
D4I110 7.02e-38 132 43 2 165 3 lpoB Penicillin-binding protein activator LpoB Erwinia amylovora (strain CFBP1430)
A8AHW5 3.22e-36 128 34 3 211 3 lpoB Penicillin-binding protein activator LpoB Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696)
A4W9B9 6.37e-36 127 34 3 210 3 lpoB Penicillin-binding protein activator LpoB Enterobacter sp. (strain 638)
Q2NU30 2.96e-34 123 40 1 189 3 lpoB Penicillin-binding protein activator LpoB Sodalis glossinidius (strain morsitans)
Q8ZQ08 1.75e-33 121 35 2 196 1 lpoB Penicillin-binding protein activator LpoB Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
A6T7G4 2.61e-33 121 34 4 212 3 lpoB Penicillin-binding protein activator LpoB Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578)
D4GC59 3.44e-33 120 41 2 180 3 lpoB Penicillin-binding protein activator LpoB Pantoea ananatis (strain LMG 20103)
D0Z8F8 3.36e-31 115 39 1 194 3 lpoB Penicillin-binding protein activator LpoB Edwardsiella tarda (strain EIB202)
A1JME2 5.83e-31 114 43 0 130 3 lpoB Penicillin-binding protein activator LpoB Yersinia enterocolitica serotype O:8 / biotype 1B (strain NCTC 13174 / 8081)
C9Y1J4 3.87e-29 110 34 4 202 3 lpoB Penicillin-binding protein activator LpoB Cronobacter turicensis (strain DSM 18703 / CCUG 55852 / LMG 23827 / z3032)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS04275
Feature type CDS
Gene -
Product penicillin-binding protein activator LpoB
Location 958985 - 959566 (strand: 1)
Length 582 (nucleotides) / 193 (amino acids)
In genomic island -

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_1993
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF13036 Peptidoglycan-synthase activator LpoB

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3417 Cell wall/membrane/envelope biogenesis (M) M Outer membrane lipoprotein LpoB, binds and activates PBP1b

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K07337 penicillin-binding protein activator - -

Protein Sequence

MKKMLFVVAAVFLLAGCPSMLPQQPPAPVEPVTPTEPTEPPKPIEPPIEVVPTPPKITSINWNAAIQPLIREMSVTDDLATGKLLVVDNVKNNSGGNIQAVNATNTIIDSVNSISALQTVPYAQMMSARKALGLSGEDSLGLRSAAIGLARYLQADYILFSTVDGKKDNRVISMQLMSVASGEILWSGRHKVE

Flanking regions ( +/- flanking 50bp)

ACAGTGAGTTATGTCAGAGTCTATCTCTTTACTTAGGATAAGGTAGTCATATGAAAAAAATGCTATTTGTGGTGGCAGCGGTATTTTTACTGGCAGGTTGTCCATCGATGTTACCACAACAACCCCCAGCACCTGTAGAGCCTGTTACTCCCACAGAGCCAACAGAGCCACCTAAACCTATCGAGCCACCCATAGAGGTTGTACCAACACCGCCAAAAATAACCAGTATTAATTGGAACGCGGCCATTCAGCCATTAATTAGAGAGATGTCTGTCACGGATGATTTAGCAACTGGCAAATTATTAGTGGTTGATAATGTAAAAAATAATTCGGGCGGAAACATCCAAGCAGTTAATGCTACTAACACAATTATCGACTCAGTAAATAGTATTAGTGCATTACAAACAGTTCCTTATGCACAAATGATGTCAGCAAGAAAAGCATTAGGACTATCCGGTGAAGATAGCTTAGGATTGCGCAGTGCGGCAATTGGTTTAGCGCGTTATTTGCAAGCAGACTATATTTTGTTTTCTACTGTCGATGGTAAGAAAGATAATCGTGTGATCAGCATGCAATTAATGTCGGTTGCGAGCGGAGAAATACTCTGGAGCGGGCGCCATAAGGTTGAGTAAGTCTTATCAACAACAGTTATTGAGCCTATTGCGGGAATGGTTTCCCGCAA