Homologs in group_1993

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
EHELCC_15475 EHELCC_15475 100.0 Morganella morganii S2 lpoB penicillin-binding protein activator LpoB
NLDBIP_16005 NLDBIP_16005 100.0 Morganella morganii S4 lpoB penicillin-binding protein activator LpoB
LHKJJB_15835 LHKJJB_15835 100.0 Morganella morganii S3 lpoB penicillin-binding protein activator LpoB
HKOGLL_14955 HKOGLL_14955 100.0 Morganella morganii S5 lpoB penicillin-binding protein activator LpoB
F4V73_RS07465 F4V73_RS07465 89.6 Morganella psychrotolerans lpoB penicillin-binding protein activator LpoB
PMI_RS04275 PMI_RS04275 45.6 Proteus mirabilis HI4320 - penicillin-binding protein activator LpoB

Distribution of the homologs in the orthogroup group_1993

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1993

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q7N395 2.78e-52 169 49 1 192 3 lpoB Penicillin-binding protein activator LpoB Photorhabdus laumondii subsp. laumondii (strain DSM 15139 / CIP 105565 / TT01)
D3VIE0 7.51e-48 157 44 2 190 3 lpoB Penicillin-binding protein activator LpoB Xenorhabdus nematophila (strain ATCC 19061 / DSM 3370 / CCUG 14189 / LMG 1036 / NCIMB 9965 / AN6)
C6DKS0 2.94e-47 156 44 3 203 3 lpoB Penicillin-binding protein activator LpoB Pectobacterium carotovorum subsp. carotovorum (strain PC1)
B4EVE5 1.71e-46 154 45 0 192 3 lpoB Penicillin-binding protein activator LpoB Proteus mirabilis (strain HI4320)
E0SHN8 7.59e-46 152 41 2 202 3 lpoB Penicillin-binding protein activator LpoB Dickeya dadantii (strain 3937)
A8GD35 4.77e-44 148 43 1 193 3 lpoB Penicillin-binding protein activator LpoB Serratia proteamaculans (strain 568)
D4I110 1.3e-43 147 45 1 173 3 lpoB Penicillin-binding protein activator LpoB Erwinia amylovora (strain CFBP1430)
Q2NU30 3.67e-43 145 47 4 192 3 lpoB Penicillin-binding protein activator LpoB Sodalis glossinidius (strain morsitans)
Q3Z312 4.54e-40 138 40 3 210 3 lpoB Penicillin-binding protein activator LpoB Shigella sonnei (strain Ss046)
P0AB38 4.54e-40 138 40 3 210 1 lpoB Penicillin-binding protein activator LpoB Escherichia coli (strain K12)
P0AB39 4.54e-40 138 40 3 210 3 lpoB Penicillin-binding protein activator LpoB Escherichia coli O157:H7
A8AHW5 5.28e-39 135 38 4 213 3 lpoB Penicillin-binding protein activator LpoB Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696)
Q7CJ14 2.43e-38 133 49 0 144 3 lpoB Penicillin-binding protein activator LpoB Yersinia pestis
D0JWX6 2.43e-38 133 49 0 144 3 lpoB Penicillin-binding protein activator LpoB Yersinia pestis (strain D182038)
A4W9B9 1.23e-37 132 37 3 212 3 lpoB Penicillin-binding protein activator LpoB Enterobacter sp. (strain 638)
C9Y1J4 5.14e-37 130 44 1 155 3 lpoB Penicillin-binding protein activator LpoB Cronobacter turicensis (strain DSM 18703 / CCUG 55852 / LMG 23827 / z3032)
A6T7G4 7.03e-37 130 37 2 212 3 lpoB Penicillin-binding protein activator LpoB Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578)
Q8ZQ08 7.46e-37 130 44 1 155 1 lpoB Penicillin-binding protein activator LpoB Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
D4GC59 9.46e-33 119 45 0 135 3 lpoB Penicillin-binding protein activator LpoB Pantoea ananatis (strain LMG 20103)
C4K8P0 4.86e-32 117 35 3 202 3 lpoB Penicillin-binding protein activator LpoB Hamiltonella defensa subsp. Acyrthosiphon pisum (strain 5AT)
D0Z8F8 1.19e-31 116 40 1 192 3 lpoB Penicillin-binding protein activator LpoB Edwardsiella tarda (strain EIB202)
A1JME2 6.77e-31 114 47 1 136 3 lpoB Penicillin-binding protein activator LpoB Yersinia enterocolitica serotype O:8 / biotype 1B (strain NCTC 13174 / 8081)

  • Number of RefSeq hits:

General

Source Morganella morganii S1
Locus tag FBDBKF_14670
Feature type CDS
Gene lpoB
Product penicillin-binding protein activator LpoB
Location 33602 - 34189 (strand: -1)
Length 588 (nucleotides) / 195 (amino acids)
In genomic island -

Contig

Accession contig_19
Length 86773 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1993
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF13036 Peptidoglycan-synthase activator LpoB

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3417 Cell wall/membrane/envelope biogenesis (M) M Outer membrane lipoprotein LpoB, binds and activates PBP1b

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K07337 penicillin-binding protein activator - -

Protein Sequence

MKRLLCVIASVWLLAGCPSTAPVTPPVPVGTVTPPPDTTPPPLPLPPPDTVPVPPKMKKIEWEQSITPLVNQMVHSDGVNQGSTLLVNKVGNKTNSSLQTSVATGALMNTIGKTGVLNVIPAGAVSSAMSVLGMGDNDTLTLRSKAIGLARYLNADYVLYSVVTGTRDARQMEMQLMSVSSGEIIWSGKGAVLEQ

Flanking regions ( +/- flanking 50bp)

ATCATCTGGGGCCGATGCTGGCGAAATAACCGGCTGACAGGAGAACGGTGATGAAACGTCTTTTATGTGTGATAGCGTCAGTCTGGCTGCTCGCCGGGTGTCCTTCAACGGCACCGGTAACACCCCCGGTACCGGTGGGTACCGTAACACCGCCGCCGGATACCACGCCGCCGCCACTGCCGCTGCCGCCGCCGGATACGGTGCCGGTTCCGCCGAAAATGAAAAAAATCGAGTGGGAACAGAGTATTACACCACTGGTTAATCAGATGGTTCACAGCGACGGCGTGAATCAGGGCAGTACGCTGCTGGTGAATAAAGTCGGCAATAAAACCAACAGCAGCCTGCAGACCAGCGTTGCGACCGGTGCGCTGATGAACACCATCGGAAAAACCGGGGTACTGAATGTGATCCCGGCCGGTGCGGTCAGCAGTGCCATGTCGGTGCTGGGTATGGGTGATAACGACACACTGACCCTGCGCAGCAAAGCTATCGGTCTGGCGCGTTATCTGAATGCCGACTATGTGCTGTACAGTGTGGTAACCGGTACCCGTGATGCCCGTCAGATGGAGATGCAGCTGATGTCTGTCAGCAGCGGTGAAATCATCTGGTCCGGTAAGGGCGCGGTGCTTGAGCAGTAACAGCGCGTTACTGCTATGCCTCGCTGAACACTTTCCCGCACTGCCTGCCG