Homologs in group_4810

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0 homologs were identified in 0 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product

Distribution of the homologs in the orthogroup group_4810

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_4810

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0A1T0 4.26e-05 42 25 4 94 3 ymdA Uncharacterized protein YmdA Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P0A1T1 4.26e-05 42 25 4 94 3 ymdA Uncharacterized protein YmdA Salmonella typhi

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS04095
Feature type CDS
Gene -
Product hypothetical protein
Location 916160 - 916486 (strand: 1)
Length 327 (nucleotides) / 108 (amino acids)
In genomic island -

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_4810
Orthogroup size 1
N. genomes 1

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Genomic region

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3539 Cell motility (N) N Pilin (type 1 fimbrial protein)

Protein Sequence

MKKYLTILCSLLVSSSISFAWASTAQQTTGQIYVRGAIVDPACEINFTLDQAEYQCYKNNKVFTSTQSIFPTSFEQSSSIILPQNMGKAEIRWMDGAEKNGLINVQYF

Flanking regions ( +/- flanking 50bp)

GAGTAGGCGTGATCCTCATACCTACTGCGCAAACAAGAAGTGAGGTCGTTATGAAAAAATATCTGACCATTTTATGCAGTCTTCTCGTTTCCAGTTCGATATCATTTGCTTGGGCGTCAACAGCACAGCAAACCACAGGACAGATTTATGTACGAGGAGCGATTGTTGATCCAGCTTGTGAAATTAATTTCACACTCGATCAAGCTGAGTACCAATGTTACAAAAATAACAAAGTCTTTACATCAACCCAGTCTATTTTCCCTACCTCTTTTGAACAATCATCATCAATTATACTGCCTCAAAATATGGGGAAAGCTGAAATCCGTTGGATGGATGGCGCTGAAAAAAATGGATTGATTAATGTGCAATATTTTTAATTGTGTATTGACAGGGAATGATTAGGTAAACAAGTCAAATAATCGTTGTC