Homologs in group_550

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_01320 FBDBKF_01320 55.4 Morganella morganii S1 tssJ type VI secretion system lipoprotein TssJ
EHELCC_00225 EHELCC_00225 55.4 Morganella morganii S2 tssJ type VI secretion system lipoprotein TssJ
NLDBIP_03235 NLDBIP_03235 55.4 Morganella morganii S4 tssJ type VI secretion system lipoprotein TssJ
LHKJJB_04750 LHKJJB_04750 55.4 Morganella morganii S3 tssJ type VI secretion system lipoprotein TssJ
HKOGLL_02295 HKOGLL_02295 55.4 Morganella morganii S5 tssJ type VI secretion system lipoprotein TssJ
F4V73_RS02350 F4V73_RS02350 53.7 Morganella psychrotolerans tssJ type VI secretion system lipoprotein TssJ

Distribution of the homologs in the orthogroup group_550

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_550

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS03655
Feature type CDS
Gene tssJ
Product type VI secretion system lipoprotein TssJ
Location 822767 - 823318 (strand: -1)
Length 552 (nucleotides) / 183 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_550
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF12790 Type VI secretion lipoprotein, VasD, EvfM, TssJ, VC_A0113

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3521 Intracellular trafficking, secretion, and vesicular transport (U) U Predicted component of the type VI protein secretion system

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K11906 type VI secretion system protein VasD Bacterial secretion system -

Protein Sequence

MQLRTFSILLLFSSFLILSGCSKPFEAAGKMGKILLDPSTPVGQPKDQPSTVALTILAEPYINPNQEGEAAPINIQVVYLNEDSVFGSVDHDQIDAKEGDLEKVLKKNYIDHQDYTILPGQYKPFPTMTLDPSNRYIGIIAYYSDPDKAEWKKIVKARGKGRHYFLLVHIRENEIEFRQEEDD

Flanking regions ( +/- flanking 50bp)

CAGCCATGCTTATGACAGAGCGCTGAGAAAAGGAATAGAGGAAGCTTAATATGCAGCTTAGAACTTTCTCAATATTACTGTTATTTAGCTCTTTTTTAATATTGAGTGGATGTAGTAAACCTTTTGAAGCCGCGGGTAAAATGGGGAAAATCTTATTAGATCCCTCAACTCCTGTTGGGCAACCGAAAGATCAGCCCTCTACCGTTGCATTAACCATCCTTGCGGAGCCCTATATTAATCCTAATCAGGAAGGTGAAGCTGCGCCGATAAATATCCAAGTTGTTTATCTTAACGAAGATTCAGTATTTGGCTCTGTTGATCATGATCAGATAGATGCAAAAGAGGGTGACTTAGAGAAAGTTCTAAAGAAAAATTATATTGACCATCAAGACTACACCATTTTACCTGGCCAATATAAACCCTTCCCTACTATGACGTTAGACCCATCTAACCGTTACATTGGCATTATTGCCTATTACTCAGATCCTGATAAAGCAGAATGGAAGAAAATAGTCAAAGCGCGTGGTAAAGGACGCCACTACTTCCTATTAGTGCACATTAGGGAAAATGAAATCGAATTTAGACAAGAAGAGGATGATTAATATGTCAACTAAAAATAGAGTGATCTGGCGTGAAGGGCTATTTATCAAAC