Homologs in group_4366

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0 homologs were identified in 0 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product

Distribution of the homologs in the orthogroup group_4366

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_4366

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P58408 0.0 515 67 0 348 3 allD Ureidoglycolate dehydrogenase (NAD(+)) Escherichia coli O157:H7
P77555 0.0 514 68 0 348 1 allD Ureidoglycolate dehydrogenase (NAD(+)) Escherichia coli (strain K12)
O34736 3.46e-106 317 46 0 333 2 yjmC Uncharacterized oxidoreductase YjmC Bacillus subtilis (strain 168)
Q58820 2.88e-66 215 39 7 335 1 comC L-sulfolactate dehydrogenase Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
O59028 1.63e-64 211 38 3 340 1 mdh Malate dehydrogenase Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
Q9V0D5 2.19e-62 206 37 3 340 3 mdh Malate dehydrogenase Pyrococcus abyssi (strain GE5 / Orsay)
P16142 9.93e-62 203 36 5 333 1 mdh Malate/(S)-sulfolactate dehydrogenase Methanothermus fervidus (strain ATCC 43054 / DSM 2088 / JCM 10308 / V24 S)
O27273 2.45e-57 192 34 5 333 3 comC L-sulfolactate dehydrogenase Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H)
Q1QWN5 2.5e-38 142 28 8 343 1 comC (2R)-3-sulfolactate dehydrogenase (NADP(+)) Chromohalobacter salexigens (strain ATCC BAA-138 / DSM 3043 / CIP 106854 / NCIMB 13768 / 1H11)
Q5FB93 4.22e-37 139 30 4 323 1 dpkA Delta(1)-pyrroline-2-carboxylate/Delta(1)-piperideine-2-carboxylate reductase Pseudomonas putida
P30178 3.06e-36 137 32 9 331 1 hcxB Hydroxycarboxylate dehydrogenase B Escherichia coli (strain K12)
Q4U331 8.63e-36 135 32 3 324 1 dpkA Delta(1)-pyrroline-2-carboxylate/Delta(1)-piperideine-2-carboxylate reductase Pseudomonas syringae pv. tomato
P58409 9.27e-36 136 32 9 331 3 hcxB Hydroxycarboxylate dehydrogenase B Escherichia coli O157:H7
D7A0Y0 1.92e-34 132 30 5 335 1 Snov_0154 Delta(1)-pyrroline-2-carboxylate reductase Ancylobacter novellus (strain ATCC 8093 / DSM 506 / JCM 20403 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIMB 10456)
A9ALD3 1.72e-32 127 28 3 330 1 ybiC Delta(1)-pyrroline-2-carboxylate reductase 2 Burkholderia multivorans (strain ATCC 17616 / 249)
Q0B9S2 5.81e-32 125 27 3 330 1 Bamb_3547 Delta(1)-pyrroline-2-carboxylate reductase 1 Burkholderia ambifaria (strain ATCC BAA-244 / DSM 16087 / CCUG 44356 / LMG 19182 / AMMD)
Q9I492 1.04e-30 122 28 7 344 1 lhpD Delta(1)-pyrroline-2-carboxylate/Delta(1)-piperideine-2-carboxylate reductase Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q7CVK1 5.01e-28 115 27 6 329 1 Atu4676 Delta(1)-pyrroline-2-carboxylate reductase Agrobacterium fabrum (strain C58 / ATCC 33970)
Q07251 2.63e-27 113 28 7 343 1 ldh L-lactate dehydrogenase Cupriavidus necator (strain ATCC 17699 / DSM 428 / KCTC 22496 / NCIMB 10442 / H16 / Stanier 337)
Q4KGT8 1.29e-25 108 26 7 338 1 PFL_1416 Delta(1)-pyrroline-2-carboxylate reductase Pseudomonas fluorescens (strain ATCC BAA-477 / NRRL B-23932 / Pf-5)
Q93Q64 6.76e-25 106 24 6 334 3 dlgD 2,3-diketo-L-gulonate reductase Klebsiella oxytoca
B5XMX0 1.85e-24 105 24 6 334 3 dlgD 2,3-diketo-L-gulonate reductase Klebsiella pneumoniae (strain 342)
B7ULD6 4.12e-24 103 23 6 334 3 dlgD 2,3-diketo-L-gulonate reductase Escherichia coli O127:H6 (strain E2348/69 / EPEC)
Q1R519 4.56e-24 103 23 6 334 3 dlgD 2,3-diketo-L-gulonate reductase Escherichia coli (strain UTI89 / UPEC)
Q8FCD6 4.56e-24 103 23 6 334 3 dlgD 2,3-diketo-L-gulonate reductase Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
A1AHB7 4.56e-24 103 23 6 334 3 dlgD 2,3-diketo-L-gulonate reductase Escherichia coli O1:K1 / APEC
B7MFE1 4.56e-24 103 23 6 334 3 dlgD 2,3-diketo-L-gulonate reductase Escherichia coli O45:K1 (strain S88 / ExPEC)
Q0TBM6 4.65e-24 103 23 6 334 3 dlgD 2,3-diketo-L-gulonate reductase Escherichia coli O6:K15:H31 (strain 536 / UPEC)
P37672 5.19e-24 103 23 6 334 1 dlgD 2,3-diketo-L-gulonate reductase Escherichia coli (strain K12)
B1IZL7 5.19e-24 103 23 6 334 3 dlgD 2,3-diketo-L-gulonate reductase Escherichia coli (strain ATCC 8739 / DSM 1576 / NBRC 3972 / NCIMB 8545 / WDCM 00012 / Crooks)
A8A634 5.19e-24 103 23 6 334 3 dlgD 2,3-diketo-L-gulonate reductase Escherichia coli O9:H4 (strain HS)
B1X8J1 5.19e-24 103 23 6 334 3 dlgD 2,3-diketo-L-gulonate reductase Escherichia coli (strain K12 / DH10B)
C4ZXG6 5.19e-24 103 23 6 334 3 dlgD 2,3-diketo-L-gulonate reductase Escherichia coli (strain K12 / MC4100 / BW2952)
B7N223 5.8e-24 103 23 6 334 3 dlgD 2,3-diketo-L-gulonate reductase Escherichia coli O81 (strain ED1a)
Q65WJ9 6.1e-24 103 23 6 341 3 dlgD 2,3-diketo-L-gulonate reductase Mannheimia succiniciproducens (strain KCTC 0769BP / MBEL55E)
Q31V43 7.75e-24 103 23 6 334 3 dlgD 2,3-diketo-L-gulonate reductase Shigella boydii serotype 4 (strain Sb227)
B7NEM8 8.74e-24 103 23 6 334 3 dlgD 2,3-diketo-L-gulonate reductase Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC)
Q83PQ6 9.57e-24 103 23 6 334 3 dlgD 2,3-diketo-L-gulonate reductase Shigella flexneri
B6I3E8 9.57e-24 103 23 6 334 3 dlgD 2,3-diketo-L-gulonate reductase Escherichia coli (strain SE11)
B7M3J9 9.57e-24 103 23 6 334 3 dlgD 2,3-diketo-L-gulonate reductase Escherichia coli O8 (strain IAI1)
B7L6Z1 9.57e-24 103 23 6 334 3 dlgD 2,3-diketo-L-gulonate reductase Escherichia coli (strain 55989 / EAEC)
B1LJD7 1.49e-23 102 23 6 334 3 dlgD 2,3-diketo-L-gulonate reductase Escherichia coli (strain SMS-3-5 / SECEC)
B7NP75 1.49e-23 102 23 6 334 3 dlgD 2,3-diketo-L-gulonate reductase Escherichia coli O7:K1 (strain IAI39 / ExPEC)
B4T959 2.35e-23 102 23 6 334 3 dlgD 2,3-diketo-L-gulonate reductase Salmonella heidelberg (strain SL476)
B7LTI6 2.45e-23 102 23 6 334 3 dlgD 2,3-diketo-L-gulonate reductase Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CCUG 18766 / IAM 14443 / JCM 21226 / LMG 7866 / NBRC 102419 / NCTC 12128 / CDC 0568-73)
B4TZ64 2.47e-23 102 23 6 334 3 dlgD 2,3-diketo-L-gulonate reductase Salmonella schwarzengrund (strain CVM19633)
B5R4Q5 2.47e-23 102 23 6 334 3 dlgD 2,3-diketo-L-gulonate reductase Salmonella enteritidis PT4 (strain P125109)
B5FLE5 2.47e-23 102 23 6 334 3 dlgD 2,3-diketo-L-gulonate reductase Salmonella dublin (strain CT_02021853)
B5EX79 2.47e-23 102 23 6 334 3 dlgD 2,3-diketo-L-gulonate reductase Salmonella agona (strain SL483)
B4SWL6 2.79e-23 101 23 6 334 3 dlgD 2,3-diketo-L-gulonate reductase Salmonella newport (strain SL254)
A8ARG3 2.82e-23 101 23 6 334 3 dlgD 2,3-diketo-L-gulonate reductase Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696)
Q8ZL83 3.37e-23 101 23 6 334 3 dlgD 2,3-diketo-L-gulonate reductase Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
A9MUW2 3.65e-23 101 23 6 334 3 dlgD 2,3-diketo-L-gulonate reductase Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7)
B5BHV4 4.07e-23 101 23 6 334 3 dlgD 2,3-diketo-L-gulonate reductase Salmonella paratyphi A (strain AKU_12601)
Q5PLN6 4.07e-23 101 23 6 334 3 dlgD 2,3-diketo-L-gulonate reductase Salmonella paratyphi A (strain ATCC 9150 / SARB42)
A7ZTC2 4.5e-23 101 23 6 334 3 dlgD 2,3-diketo-L-gulonate reductase Escherichia coli O139:H28 (strain E24377A / ETEC)
Q8Z2C5 5.02e-23 101 24 6 334 3 dlgD 2,3-diketo-L-gulonate reductase Salmonella typhi
C0Q1C9 6.04e-22 98 23 6 334 3 dlgD 2,3-diketo-L-gulonate reductase Salmonella paratyphi C (strain RKS4594)
A5UIG1 2.38e-20 93 23 8 343 3 dlgD 2,3-diketo-L-gulonate reductase Haemophilus influenzae (strain PittGG)
P44995 3.43e-20 93 23 8 343 3 dlgD 2,3-diketo-L-gulonate reductase Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q9CLH5 3.9e-20 93 23 6 341 3 dlgD 2,3-diketo-L-gulonate reductase Pasteurella multocida (strain Pm70)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS03455
Feature type CDS
Gene allD
Product ureidoglycolate dehydrogenase
Location 766835 - 767884 (strand: 1)
Length 1050 (nucleotides) / 349 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_4366
Orthogroup size 1
N. genomes 1

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Genomic region

Domains

PF02615 Malate/L-lactate dehydrogenase

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG2055 Energy production and conversion (C) C Malate/lactate/ureidoglycolate dehydrogenase, LDH2 family

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K00073 ureidoglycolate dehydrogenase (NAD+) [EC:1.1.1.350] Purine metabolism
Metabolic pathways
Microbial metabolism in diverse environments		 -

Virulence factor Annotation(s)

VF gene ID Protein VF ID Category
VFG049124 ureidoglycolate dehydrogenase VF0572 Nutritional/Metabolic factor

Protein Sequence

MIISKQQLHQLIKNKLHNAGLNENHADIVADVLVHADVKGIHSHGAVRVEYYAERISKGGTNTHPKFTYQETGPCSAIFDGDNGAGHVAAKQAMEHAINMAQEKGIAVVGVRRIGHSGALSYFVEQASASGMIGISLCQSDPMVVPFGGSEVYYGTNPIAFSAPSADDKPITFDMATTVQAWGKILDARAKHSDIPDTWAVDEAGKPTCDPFAVKGLLPIAGPKGYGLMMMVDVLSGILLGLPFGKHVSSMYHDLTQGRELGQLHIVINPAFFTDADLFKKHISQVMAELKSIKPAVGFEQVLYPGENSQLAAQRSEKEGIEIVDEIYHYLNSDVLFNQSYDNKNPFAS

Flanking regions ( +/- flanking 50bp)

TATCTTATGACGTTTCTATTTATTTAGAACCCTACTAAAGAGCCTATTGTATGATAATTTCTAAACAGCAGTTACACCAATTAATCAAAAATAAGTTACATAATGCAGGACTGAATGAAAACCATGCAGACATTGTTGCCGATGTATTAGTTCATGCTGATGTGAAAGGAATTCATTCCCATGGTGCTGTACGTGTGGAATATTATGCTGAGCGCATTAGTAAGGGAGGAACAAATACGCATCCTAAGTTTACTTATCAAGAGACAGGACCTTGTAGTGCGATTTTTGATGGTGATAATGGTGCTGGACATGTTGCTGCTAAGCAGGCCATGGAGCACGCGATTAATATGGCACAAGAGAAAGGCATTGCTGTTGTTGGGGTTAGACGTATTGGTCATAGTGGGGCGTTATCCTACTTTGTAGAACAAGCCTCTGCATCTGGAATGATTGGTATTTCACTTTGCCAATCGGATCCTATGGTAGTGCCATTTGGTGGATCTGAAGTTTATTATGGCACTAATCCTATCGCTTTTTCAGCCCCGAGTGCAGATGATAAACCTATTACCTTTGATATGGCGACGACGGTGCAGGCATGGGGTAAAATTCTCGATGCGCGGGCTAAACATAGTGACATTCCTGACACATGGGCGGTAGATGAAGCGGGCAAACCAACCTGTGATCCCTTTGCAGTAAAAGGTTTATTACCTATTGCGGGGCCAAAAGGCTATGGCTTGATGATGATGGTCGATGTATTGTCCGGTATTTTATTAGGATTACCCTTTGGTAAACATGTTAGCTCTATGTATCATGATTTGACACAAGGTCGTGAATTAGGTCAGCTCCACATTGTGATTAATCCAGCCTTTTTCACTGATGCTGATTTATTTAAAAAACACATTTCTCAAGTAATGGCTGAGTTAAAGAGTATTAAGCCTGCAGTCGGTTTTGAACAGGTATTATATCCTGGGGAAAATAGTCAGCTTGCAGCGCAGCGAAGCGAAAAAGAGGGGATAGAAATAGTTGACGAAATTTATCATTACTTAAATTCTGATGTATTATTTAATCAATCTTATGATAATAAAAATCCATTTGCCAGCTAAGTTATATTAATAAAAAAACAGCCATCCATTAATTAGGTGGCTGTTTTTGG