Homologs in group_90

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11 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_09110 FBDBKF_09110 39.4 Morganella morganii S1 fimC P pilus assembly protein, chaperone PapD
FBDBKF_10795 FBDBKF_10795 40.0 Morganella morganii S1 fimC P pilus assembly protein, chaperone PapD
EHELCC_10300 EHELCC_10300 39.4 Morganella morganii S2 fimC P pilus assembly protein, chaperone PapD
EHELCC_15130 EHELCC_15130 40.0 Morganella morganii S2 fimC P pilus assembly protein, chaperone PapD
NLDBIP_10645 NLDBIP_10645 39.4 Morganella morganii S4 fimC P pilus assembly protein, chaperone PapD
NLDBIP_14960 NLDBIP_14960 40.0 Morganella morganii S4 fimC P pilus assembly protein, chaperone PapD
LHKJJB_10710 LHKJJB_10710 39.4 Morganella morganii S3 fimC P pilus assembly protein, chaperone PapD
LHKJJB_14385 LHKJJB_14385 40.0 Morganella morganii S3 fimC P pilus assembly protein, chaperone PapD
HKOGLL_13005 HKOGLL_13005 40.0 Morganella morganii S5 fimC P pilus assembly protein, chaperone PapD
HKOGLL_13770 HKOGLL_13770 39.4 Morganella morganii S5 fimC P pilus assembly protein, chaperone PapD
F4V73_RS10840 F4V73_RS10840 39.0 Morganella psychrotolerans - molecular chaperone

Distribution of the homologs in the orthogroup group_90

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_90

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P35757 4.26e-66 207 45 6 241 3 hifB Chaperone protein HifB Haemophilus influenzae
P45991 6.12e-65 204 44 6 241 3 hifB Chaperone protein HifB Haemophilus influenzae
P33128 3.81e-59 190 42 6 242 1 yadV Probable fimbrial chaperone YadV Escherichia coli (strain K12)
P33409 1.92e-51 170 39 4 224 3 fimB Chaperone protein FimB/FhaD Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251)
P21646 1.47e-50 167 42 7 233 3 mrkB Chaperone protein MrkB Klebsiella pneumoniae
P59590 6.54e-43 148 38 8 234 3 fimC Chaperone protein FimC Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P31697 2.62e-42 147 38 8 234 1 fimC Chaperone protein FimC Escherichia coli (strain K12)
P43661 8.25e-39 137 34 6 233 3 lpfB Chaperone protein LpfB Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P37923 1.64e-38 136 41 10 231 3 fimC Chaperone protein FimC Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P42914 9.12e-37 132 35 10 239 2 yraI Probable fimbrial chaperone YraI Escherichia coli (strain K12)
P33342 6.36e-36 130 34 6 233 2 yehC Probable fimbrial chaperone YehC Escherichia coli (strain K12)
Q8X5K6 2.2e-35 128 35 8 231 2 lpfB Probable fimbrial chaperone LpfB Escherichia coli O157:H7
P62609 4.81e-35 127 37 10 227 1 focC Chaperone protein FocC Escherichia coli
P62610 4.81e-35 127 37 10 227 3 focC Chaperone protein FocC Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P77249 2.31e-33 123 34 7 232 2 sfmC Probable fimbrial chaperone SfmC Escherichia coli (strain K12)
P33407 6.9e-31 118 29 11 257 3 myfB Chaperone protein MyfB Yersinia enterocolitica
P15319 7.67e-30 114 33 10 236 1 papD Chaperone protein PapD Escherichia coli
P53516 8.54e-29 112 34 5 199 3 afaB Chaperone protein AfaB Escherichia coli
P46004 1.71e-28 111 33 8 247 3 aggD Chaperone protein AggD Escherichia coli
P69966 2.8e-28 111 31 8 227 3 psaB Chaperone protein PsaB Yersinia pseudotuberculosis serotype I (strain IP32953)
P69965 2.8e-28 111 31 8 227 3 psaB Chaperone protein PsaB Yersinia pestis
Q8X5E4 3.33e-28 110 33 6 218 2 elfD Probable fimbrial chaperone protein ElfD Escherichia coli O157:H7
P75856 8.19e-28 108 32 6 217 2 elfD Probable fimbrial chaperone protein ElfD Escherichia coli (strain K12)
P53520 3.02e-27 108 34 8 238 3 pmfD Chaperone protein PmfD Proteus mirabilis (strain HI4320)
P40876 5.22e-26 104 34 9 233 2 ycbF Uncharacterized fimbrial chaperone YcbF Escherichia coli (strain K12)
P26926 1.37e-25 103 29 6 224 1 caf1M Chaperone protein caf1M Yersinia pestis
P25402 4.3e-25 101 29 5 234 3 fanE Chaperone protein FanE Escherichia coli
P46738 1.27e-24 100 33 5 202 3 nfaE Chaperone protein NfaE Escherichia coli
P15483 1.84e-21 92 30 6 240 3 None Chaperone protein CS3-1 Escherichia coli
P75749 2.57e-20 89 31 9 207 3 ybgP Uncharacterized fimbrial chaperone YbgP Escherichia coli (strain K12)
P53519 5.67e-19 85 29 10 235 3 cssC Chaperone protein CssC Escherichia coli
P77616 6.65e-19 85 29 10 226 3 yqiH Uncharacterized fimbrial chaperone YqiH Escherichia coli (strain K12)
P53518 1.27e-18 84 28 8 231 3 cssC Chaperone protein CssC Escherichia coli
P25401 5.04e-18 83 25 4 184 1 faeE Chaperone protein FaeE Escherichia coli
Q05433 9.84e-18 82 26 4 184 3 clpE Chaperone protein ClpE Escherichia coli
P77599 9.77e-17 80 33 7 170 2 yfcS Probable fimbrial chaperone YfcS Escherichia coli (strain K12)
P33387 3.93e-10 61 25 5 208 3 sefB Chaperone protein SefB Salmonella enteritidis
P42183 5.58e-06 47 32 6 105 3 prsD Chaperone protein PrsD (Fragment) Escherichia coli

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS02645
Feature type CDS
Gene -
Product fimbria/pilus periplasmic chaperone
Location 578700 - 579425 (strand: -1)
Length 726 (nucleotides) / 241 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_90
Orthogroup size 12
N. genomes 7

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Genomic region

Domains

PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain
PF02753 Pili assembly chaperone PapD, C-terminal domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3121 Extracellular structures (W) W P pilus assembly protein, chaperone PapD

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K15540 chaperone protein EcpD - -

Virulence factor Annotation(s)

VF gene ID Protein VF ID Category
VFG042618 fimbria/pilus periplasmic chaperone VF1235 Adherence

Protein Sequence

MLKFILIFLTLFVSTVAQASVVIMGTRVVYPATQKSINVQLNNNDESPALIQSWLDTGNAAAAPDSIHVPFIITPPIFRMEPKSGQTIRIVYTGESLPQDRESLFYLNVLDIPAKPKVEENSENSEGNNNYLQLAVRSRIKFFFRPDNLNVTPDDAYQKVTWHQEGALRIKAINPTPYYITYNKISVGQDKQLTPVEQSGMIAPFSSKIFSLKEKPTLTNKVTWVVVNDYGGYQQGESTLE

Flanking regions ( +/- flanking 50bp)

TTTTATTTTACGGGGCAGAAAAAACTGCCCCATTTCCTTCTAGAGGTATTATGTTAAAGTTCATTCTTATTTTCTTGACTCTGTTTGTATCCACAGTGGCTCAAGCCAGTGTGGTTATTATGGGGACCCGCGTTGTTTATCCCGCAACGCAAAAAAGCATTAATGTTCAATTAAATAATAACGATGAATCCCCCGCATTAATTCAGTCTTGGTTAGATACCGGAAACGCAGCTGCAGCACCAGATTCAATTCACGTTCCTTTTATCATTACTCCTCCCATATTTCGTATGGAGCCGAAATCAGGGCAAACCATCCGGATTGTCTATACCGGTGAATCATTACCACAAGATAGAGAGTCTCTTTTCTATCTAAATGTCTTAGACATTCCAGCAAAACCTAAAGTGGAAGAAAATTCAGAAAACTCAGAGGGAAATAACAATTACTTACAATTAGCCGTTCGTAGTCGCATTAAGTTTTTCTTTCGCCCTGATAATCTCAACGTAACGCCTGATGATGCTTACCAAAAAGTGACTTGGCATCAGGAAGGAGCACTACGCATTAAAGCGATTAACCCAACACCTTATTACATCACTTACAACAAAATCTCAGTGGGTCAGGATAAACAGCTAACGCCTGTTGAACAAAGTGGGATGATAGCTCCTTTTTCTTCAAAAATATTTTCACTTAAAGAGAAGCCAACATTAACAAATAAAGTCACTTGGGTTGTTGTTAATGATTATGGTGGATACCAACAAGGTGAATCTACTTTGGAATAAGGTAATATAATGAATTTTAATAATCGGTTACACCTCATTTCTTATCGTTA