COG4973


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG4973, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 8 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Site-specific recombinase XerC
Function(s) descr. Replication, recombination and repair (L)

Occurence in the database

COG4973 is associated with 8 different proteins (see tab "Protein list" and "Profile")
The 8 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_189 FBDBKF_08355 45803 46720 1 xerC tyrosine recombinase XerC Morganella morganii S1
1 group_189 EHELCC_13170 117005 117922 -1 xerC tyrosine recombinase XerC Morganella morganii S2
2 group_189 NLDBIP_13510 117005 117922 -1 xerC tyrosine recombinase XerC Morganella morganii S4
3 group_189 LHKJJB_13045 44521 45438 1 xerC tyrosine recombinase XerC Morganella morganii S3
4 group_189 HKOGLL_11985 117005 117922 -1 xerC tyrosine recombinase XerC Morganella morganii S5
5 group_189 F4V73_RS09555 10515 11432 1 xerC tyrosine recombinase XerC Morganella psychrotolerans
6 group_417 PMI_RS02285 527077 528078 -1 tyrosine-type recombinase/integrase Proteus mirabilis HI4320
7 group_189 PMI_RS16605 3660010 3660933 1 xerC tyrosine recombinase XerC Proteus mirabilis HI4320